Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1814

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1813 and Rru_A1814 are separated by 30 nucleotidesRru_A1814 and Rru_A1815 are separated by 187 nucleotides Rru_A1813: Rru_A1813 - Peptidase M20D, amidohydrolase (NCBI), at 2,108,933 to 2,110,099 _A1813 Rru_A1814: Rru_A1814 - Carbon monoxide dehydrogenase subunit G (NCBI), at 2,110,130 to 2,110,756 _A1814 Rru_A1815: Rru_A1815 - Glycolate reductase (NCBI), at 2,110,944 to 2,111,915 _A1815 Position (kb) 2110 2111Strain fitness (log2 ratio) -3 -2 -1 0 1at 2109.250 kb on + strand, within Rru_A1813at 2109.251 kb on - strand, within Rru_A1813at 2109.251 kb on - strand, within Rru_A1813at 2109.407 kb on + strand, within Rru_A1813at 2109.408 kb on - strand, within Rru_A1813at 2109.408 kb on - strand, within Rru_A1813at 2109.418 kb on + strand, within Rru_A1813at 2109.664 kb on + strand, within Rru_A1813at 2109.664 kb on + strand, within Rru_A1813at 2109.665 kb on - strand, within Rru_A1813at 2109.707 kb on + strand, within Rru_A1813at 2109.786 kb on + strand, within Rru_A1813at 2109.786 kb on + strand, within Rru_A1813at 2109.787 kb on - strand, within Rru_A1813at 2109.787 kb on - strand, within Rru_A1813at 2110.049 kb on + strandat 2110.050 kb on - strandat 2110.497 kb on + strand, within Rru_A1814at 2110.497 kb on + strand, within Rru_A1814at 2110.498 kb on - strand, within Rru_A1814at 2110.586 kb on - strand, within Rru_A1814at 2110.729 kb on + strandat 2110.730 kb on - strandat 2110.730 kb on - strandat 2110.739 kb on + strandat 2110.740 kb on - strandat 2110.740 kb on - strandat 2110.740 kb on - strandat 2110.793 kb on - strandat 2110.797 kb on + strandat 2110.797 kb on + strandat 2110.797 kb on + strandat 2110.798 kb on - strandat 2110.798 kb on - strandat 2110.834 kb on - strandat 2110.929 kb on + strandat 2110.929 kb on + strandat 2110.930 kb on - strandat 2110.930 kb on - strandat 2110.930 kb on - strandat 2110.931 kb on + strandat 2110.931 kb on + strandat 2110.931 kb on + strandat 2110.931 kb on + strandat 2110.931 kb on + strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2110.932 kb on - strandat 2111.016 kb on + strandat 2111.016 kb on + strandat 2111.017 kb on - strandat 2111.153 kb on + strand, within Rru_A1815at 2111.190 kb on + strand, within Rru_A1815at 2111.191 kb on - strand, within Rru_A1815at 2111.198 kb on + strand, within Rru_A1815at 2111.199 kb on - strand, within Rru_A1815at 2111.199 kb on - strand, within Rru_A1815at 2111.199 kb on - strand, within Rru_A1815at 2111.244 kb on - strand, within Rru_A1815at 2111.359 kb on + strand, within Rru_A1815at 2111.359 kb on + strand, within Rru_A1815at 2111.360 kb on - strand, within Rru_A1815at 2111.478 kb on + strand, within Rru_A1815at 2111.478 kb on + strand, within Rru_A1815at 2111.478 kb on + strand, within Rru_A1815at 2111.745 kb on + strand, within Rru_A1815at 2111.746 kb on - strand, within Rru_A1815

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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2,109,250 + Rru_A1813 0.27 -1.6
2,109,251 - Rru_A1813 0.27 -0.9
2,109,251 - Rru_A1813 0.27 +1.0
2,109,407 + Rru_A1813 0.41 -0.7
2,109,408 - Rru_A1813 0.41 +0.6
2,109,408 - Rru_A1813 0.41 -1.6
2,109,418 + Rru_A1813 0.42 +0.0
2,109,664 + Rru_A1813 0.63 +0.0
2,109,664 + Rru_A1813 0.63 -1.6
2,109,665 - Rru_A1813 0.63 +0.0
2,109,707 + Rru_A1813 0.66 -0.6
2,109,786 + Rru_A1813 0.73 -1.6
2,109,786 + Rru_A1813 0.73 +0.0
2,109,787 - Rru_A1813 0.73 -2.6
2,109,787 - Rru_A1813 0.73 +0.0
2,110,049 + +0.0
2,110,050 - +0.0
2,110,497 + Rru_A1814 0.59 +0.0
2,110,497 + Rru_A1814 0.59 -1.9
2,110,498 - Rru_A1814 0.59 -1.0
2,110,586 - Rru_A1814 0.73 -2.2
2,110,729 + +0.0
2,110,730 - +0.0
2,110,730 - -2.2
2,110,739 + +0.0
2,110,740 - -3.4
2,110,740 - +0.0
2,110,740 - -1.9
2,110,793 - +0.0
2,110,797 + +0.0
2,110,797 + +0.0
2,110,797 + +0.0
2,110,798 - +0.6
2,110,798 - -1.6
2,110,834 - -1.0
2,110,929 + +0.0
2,110,929 + -1.1
2,110,930 - -0.6
2,110,930 - -1.0
2,110,930 - +0.0
2,110,931 + +0.0
2,110,931 + +1.6
2,110,931 + +0.0
2,110,931 + -2.0
2,110,931 + -2.8
2,110,932 - -2.3
2,110,932 - -2.2
2,110,932 - -1.5
2,110,932 - -2.6
2,110,932 - -1.2
2,110,932 - +0.0
2,110,932 - -1.8
2,110,932 - +0.0
2,110,932 - -0.7
2,110,932 - -1.0
2,110,932 - +0.0
2,111,016 + -2.4
2,111,016 + +0.0
2,111,017 - -1.0
2,111,153 + Rru_A1815 0.22 +0.0
2,111,190 + Rru_A1815 0.25 +0.0
2,111,191 - Rru_A1815 0.25 -1.0
2,111,198 + Rru_A1815 0.26 +0.0
2,111,199 - Rru_A1815 0.26 -1.0
2,111,199 - Rru_A1815 0.26 -1.8
2,111,199 - Rru_A1815 0.26 +0.3
2,111,244 - Rru_A1815 0.31 -1.9
2,111,359 + Rru_A1815 0.43 +0.0
2,111,359 + Rru_A1815 0.43 +0.4
2,111,360 - Rru_A1815 0.43 +0.1
2,111,478 + Rru_A1815 0.55 -1.6
2,111,478 + Rru_A1815 0.55 -1.8
2,111,478 + Rru_A1815 0.55 -1.5
2,111,745 + Rru_A1815 0.82 -1.0
2,111,746 - Rru_A1815 0.83 +0.4

Or see this region's nucleotide sequence