Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1813 and Rru_A1814 are separated by 30 nucleotides Rru_A1814 and Rru_A1815 are separated by 187 nucleotides
Rru_A1813: Rru_A1813 - Peptidase M20D, amidohydrolase (NCBI), at 2,108,933 to 2,110,099
_A1813
Rru_A1814: Rru_A1814 - Carbon monoxide dehydrogenase subunit G (NCBI), at 2,110,130 to 2,110,756
_A1814
Rru_A1815: Rru_A1815 - Glycolate reductase (NCBI), at 2,110,944 to 2,111,915
_A1815
Position (kb)
2110
2111 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2109.250 kb on + strand, within Rru_A1813 at 2109.251 kb on - strand, within Rru_A1813 at 2109.251 kb on - strand, within Rru_A1813 at 2109.407 kb on + strand, within Rru_A1813 at 2109.408 kb on - strand, within Rru_A1813 at 2109.408 kb on - strand, within Rru_A1813 at 2109.418 kb on + strand, within Rru_A1813 at 2109.664 kb on + strand, within Rru_A1813 at 2109.664 kb on + strand, within Rru_A1813 at 2109.665 kb on - strand, within Rru_A1813 at 2109.707 kb on + strand, within Rru_A1813 at 2109.786 kb on + strand, within Rru_A1813 at 2109.786 kb on + strand, within Rru_A1813 at 2109.787 kb on - strand, within Rru_A1813 at 2109.787 kb on - strand, within Rru_A1813 at 2110.049 kb on + strand at 2110.050 kb on - strand at 2110.497 kb on + strand, within Rru_A1814 at 2110.497 kb on + strand, within Rru_A1814 at 2110.498 kb on - strand, within Rru_A1814 at 2110.586 kb on - strand, within Rru_A1814 at 2110.729 kb on + strand at 2110.730 kb on - strand at 2110.730 kb on - strand at 2110.739 kb on + strand at 2110.740 kb on - strand at 2110.740 kb on - strand at 2110.740 kb on - strand at 2110.793 kb on - strand at 2110.797 kb on + strand at 2110.797 kb on + strand at 2110.797 kb on + strand at 2110.798 kb on - strand at 2110.798 kb on - strand at 2110.834 kb on - strand at 2110.929 kb on + strand at 2110.929 kb on + strand at 2110.930 kb on - strand at 2110.930 kb on - strand at 2110.930 kb on - strand at 2110.931 kb on + strand at 2110.931 kb on + strand at 2110.931 kb on + strand at 2110.931 kb on + strand at 2110.931 kb on + strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2110.932 kb on - strand at 2111.016 kb on + strand at 2111.016 kb on + strand at 2111.017 kb on - strand at 2111.153 kb on + strand, within Rru_A1815 at 2111.190 kb on + strand, within Rru_A1815 at 2111.191 kb on - strand, within Rru_A1815 at 2111.198 kb on + strand, within Rru_A1815 at 2111.199 kb on - strand, within Rru_A1815 at 2111.199 kb on - strand, within Rru_A1815 at 2111.199 kb on - strand, within Rru_A1815 at 2111.244 kb on - strand, within Rru_A1815 at 2111.359 kb on + strand, within Rru_A1815 at 2111.359 kb on + strand, within Rru_A1815 at 2111.360 kb on - strand, within Rru_A1815 at 2111.478 kb on + strand, within Rru_A1815 at 2111.478 kb on + strand, within Rru_A1815 at 2111.478 kb on + strand, within Rru_A1815 at 2111.745 kb on + strand, within Rru_A1815 at 2111.746 kb on - strand, within Rru_A1815
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 2,109,250 + Rru_A1813 0.27 -1.6 2,109,251 - Rru_A1813 0.27 -0.9 2,109,251 - Rru_A1813 0.27 +1.0 2,109,407 + Rru_A1813 0.41 -0.7 2,109,408 - Rru_A1813 0.41 +0.6 2,109,408 - Rru_A1813 0.41 -1.6 2,109,418 + Rru_A1813 0.42 +0.0 2,109,664 + Rru_A1813 0.63 +0.0 2,109,664 + Rru_A1813 0.63 -1.6 2,109,665 - Rru_A1813 0.63 +0.0 2,109,707 + Rru_A1813 0.66 -0.6 2,109,786 + Rru_A1813 0.73 -1.6 2,109,786 + Rru_A1813 0.73 +0.0 2,109,787 - Rru_A1813 0.73 -2.6 2,109,787 - Rru_A1813 0.73 +0.0 2,110,049 + +0.0 2,110,050 - +0.0 2,110,497 + Rru_A1814 0.59 +0.0 2,110,497 + Rru_A1814 0.59 -1.9 2,110,498 - Rru_A1814 0.59 -1.0 2,110,586 - Rru_A1814 0.73 -2.2 2,110,729 + +0.0 2,110,730 - +0.0 2,110,730 - -2.2 2,110,739 + +0.0 2,110,740 - -3.4 2,110,740 - +0.0 2,110,740 - -1.9 2,110,793 - +0.0 2,110,797 + +0.0 2,110,797 + +0.0 2,110,797 + +0.0 2,110,798 - +0.6 2,110,798 - -1.6 2,110,834 - -1.0 2,110,929 + +0.0 2,110,929 + -1.1 2,110,930 - -0.6 2,110,930 - -1.0 2,110,930 - +0.0 2,110,931 + +0.0 2,110,931 + +1.6 2,110,931 + +0.0 2,110,931 + -2.0 2,110,931 + -2.8 2,110,932 - -2.3 2,110,932 - -2.2 2,110,932 - -1.5 2,110,932 - -2.6 2,110,932 - -1.2 2,110,932 - +0.0 2,110,932 - -1.8 2,110,932 - +0.0 2,110,932 - -0.7 2,110,932 - -1.0 2,110,932 - +0.0 2,111,016 + -2.4 2,111,016 + +0.0 2,111,017 - -1.0 2,111,153 + Rru_A1815 0.22 +0.0 2,111,190 + Rru_A1815 0.25 +0.0 2,111,191 - Rru_A1815 0.25 -1.0 2,111,198 + Rru_A1815 0.26 +0.0 2,111,199 - Rru_A1815 0.26 -1.0 2,111,199 - Rru_A1815 0.26 -1.8 2,111,199 - Rru_A1815 0.26 +0.3 2,111,244 - Rru_A1815 0.31 -1.9 2,111,359 + Rru_A1815 0.43 +0.0 2,111,359 + Rru_A1815 0.43 +0.4 2,111,360 - Rru_A1815 0.43 +0.1 2,111,478 + Rru_A1815 0.55 -1.6 2,111,478 + Rru_A1815 0.55 -1.8 2,111,478 + Rru_A1815 0.55 -1.5 2,111,745 + Rru_A1815 0.82 -1.0 2,111,746 - Rru_A1815 0.83 +0.4
Or see this region's nucleotide sequence