Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1770

Experiment: acetate; Light intensity 38 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1768 and Rru_A1769 are separated by 25 nucleotidesRru_A1769 and Rru_A1770 overlap by 1 nucleotidesRru_A1770 and Rru_A1771 are separated by 89 nucleotides Rru_A1768: Rru_A1768 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (NCBI), at 2,060,816 to 2,061,475 _A1768 Rru_A1769: Rru_A1769 - Acid phosphatase (NCBI), at 2,061,501 to 2,062,286 _A1769 Rru_A1770: Rru_A1770 - Serine--tRNA ligase (NCBI), at 2,062,286 to 2,063,557 _A1770 Rru_A1771: Rru_A1771 - Sec-independent periplasmic protein translocase (NCBI), at 2,063,647 to 2,064,618 _A1771 Position (kb) 2062 2063 2064Strain fitness (log2 ratio) -2 -1 0 1at 2061.339 kb on + strand, within Rru_A1768at 2061.339 kb on + strand, within Rru_A1768at 2061.950 kb on - strand, within Rru_A1769at 2063.758 kb on - strand, within Rru_A1771

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
remove
2,061,339 + Rru_A1768 0.79 -0.7
2,061,339 + Rru_A1768 0.79 -2.6
2,061,950 - Rru_A1769 0.57 -0.0
2,063,758 - Rru_A1771 0.11 -1.6

Or see this region's nucleotide sequence