Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1738 and Rru_A1739 are separated by 72 nucleotides Rru_A1739 and Rru_A1740 are separated by 464 nucleotides Rru_A1740 and Rru_A1741 are separated by 26 nucleotides Rru_A1741 and Rru_AR0034 are separated by 123 nucleotides
Rru_A1738: Rru_A1738 - Protein of unknown function UPF0150 (NCBI), at 2,030,547 to 2,030,933
_A1738
Rru_A1739: Rru_A1739 - hypothetical protein (NCBI), at 2,031,006 to 2,031,200
_A1739
Rru_A1740: Rru_A1740 - hypothetical protein (NCBI), at 2,031,665 to 2,032,000
_A1740
Rru_A1741: Rru_A1741 - Phage integrase (NCBI), at 2,032,027 to 2,032,863
_A1741
Rru_AR0034: Rru_AR0034 - tRNA-Lys (NCBI), at 2,032,987 to 2,033,062
_AR0034
Position (kb)
2031
2032
2033 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2030.953 kb on - strand at 2031.325 kb on - strand at 2031.325 kb on - strand at 2031.344 kb on - strand at 2031.344 kb on - strand at 2031.401 kb on - strand at 2031.537 kb on + strand at 2031.537 kb on + strand at 2031.537 kb on + strand at 2031.537 kb on + strand at 2031.538 kb on - strand at 2031.539 kb on + strand at 2031.540 kb on - strand at 2031.540 kb on - strand at 2031.540 kb on - strand at 2031.541 kb on + strand at 2031.541 kb on + strand at 2031.542 kb on - strand at 2031.542 kb on - strand at 2031.542 kb on - strand at 2031.542 kb on - strand at 2031.627 kb on + strand at 2031.627 kb on + strand at 2031.628 kb on - strand at 2031.628 kb on - strand at 2031.687 kb on - strand at 2031.826 kb on + strand, within Rru_A1740 at 2031.826 kb on + strand, within Rru_A1740 at 2031.827 kb on - strand, within Rru_A1740 at 2031.827 kb on - strand, within Rru_A1740 at 2031.827 kb on - strand, within Rru_A1740 at 2031.827 kb on - strand, within Rru_A1740 at 2031.932 kb on + strand, within Rru_A1740 at 2031.950 kb on + strand, within Rru_A1740 at 2031.951 kb on - strand, within Rru_A1740 at 2032.063 kb on + strand at 2032.063 kb on + strand at 2032.063 kb on + strand at 2032.063 kb on + strand at 2032.064 kb on - strand at 2032.064 kb on - strand at 2032.110 kb on - strand at 2032.307 kb on + strand, within Rru_A1741 at 2032.369 kb on + strand, within Rru_A1741 at 2032.370 kb on - strand, within Rru_A1741 at 2032.370 kb on - strand, within Rru_A1741 at 2032.690 kb on - strand, within Rru_A1741 at 2032.861 kb on + strand at 2032.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 2,030,953 - -1.0 2,031,325 - -1.6 2,031,325 - -0.4 2,031,344 - -1.2 2,031,344 - -0.0 2,031,401 - -0.0 2,031,537 + -0.0 2,031,537 + -2.0 2,031,537 + -0.9 2,031,537 + +1.6 2,031,538 - -1.0 2,031,539 + -0.0 2,031,540 - -0.0 2,031,540 - -3.4 2,031,540 - -0.0 2,031,541 + -0.0 2,031,541 + -0.0 2,031,542 - -0.0 2,031,542 - -0.8 2,031,542 - +1.6 2,031,542 - -0.0 2,031,627 + -1.0 2,031,627 + -0.0 2,031,628 - -1.6 2,031,628 - -2.8 2,031,687 - +0.6 2,031,826 + Rru_A1740 0.48 -1.0 2,031,826 + Rru_A1740 0.48 -1.0 2,031,827 - Rru_A1740 0.48 -2.3 2,031,827 - Rru_A1740 0.48 -2.2 2,031,827 - Rru_A1740 0.48 -2.1 2,031,827 - Rru_A1740 0.48 -2.6 2,031,932 + Rru_A1740 0.79 -0.0 2,031,950 + Rru_A1740 0.85 -0.0 2,031,951 - Rru_A1740 0.85 -1.2 2,032,063 + -0.0 2,032,063 + -0.0 2,032,063 + -2.0 2,032,063 + -0.6 2,032,064 - -0.0 2,032,064 - -2.6 2,032,110 - -0.0 2,032,307 + Rru_A1741 0.33 -1.0 2,032,369 + Rru_A1741 0.41 +0.4 2,032,370 - Rru_A1741 0.41 -0.0 2,032,370 - Rru_A1741 0.41 +0.1 2,032,690 - Rru_A1741 0.79 -0.0 2,032,861 + -0.0 2,032,972 - -1.0
Or see this region's nucleotide sequence