Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1740

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1738 and Rru_A1739 are separated by 72 nucleotidesRru_A1739 and Rru_A1740 are separated by 464 nucleotidesRru_A1740 and Rru_A1741 are separated by 26 nucleotidesRru_A1741 and Rru_AR0034 are separated by 123 nucleotides Rru_A1738: Rru_A1738 - Protein of unknown function UPF0150 (NCBI), at 2,030,547 to 2,030,933 _A1738 Rru_A1739: Rru_A1739 - hypothetical protein (NCBI), at 2,031,006 to 2,031,200 _A1739 Rru_A1740: Rru_A1740 - hypothetical protein (NCBI), at 2,031,665 to 2,032,000 _A1740 Rru_A1741: Rru_A1741 - Phage integrase (NCBI), at 2,032,027 to 2,032,863 _A1741 Rru_AR0034: Rru_AR0034 - tRNA-Lys (NCBI), at 2,032,987 to 2,033,062 _AR0034 Position (kb) 2031 2032 2033Strain fitness (log2 ratio) -3 -2 -1 0 1at 2030.953 kb on - strandat 2031.325 kb on - strandat 2031.325 kb on - strandat 2031.344 kb on - strandat 2031.344 kb on - strandat 2031.401 kb on - strandat 2031.537 kb on + strandat 2031.537 kb on + strandat 2031.537 kb on + strandat 2031.537 kb on + strandat 2031.538 kb on - strandat 2031.539 kb on + strandat 2031.540 kb on - strandat 2031.540 kb on - strandat 2031.540 kb on - strandat 2031.541 kb on + strandat 2031.541 kb on + strandat 2031.542 kb on - strandat 2031.542 kb on - strandat 2031.542 kb on - strandat 2031.542 kb on - strandat 2031.627 kb on + strandat 2031.627 kb on + strandat 2031.628 kb on - strandat 2031.628 kb on - strandat 2031.687 kb on - strandat 2031.826 kb on + strand, within Rru_A1740at 2031.826 kb on + strand, within Rru_A1740at 2031.827 kb on - strand, within Rru_A1740at 2031.827 kb on - strand, within Rru_A1740at 2031.827 kb on - strand, within Rru_A1740at 2031.827 kb on - strand, within Rru_A1740at 2031.932 kb on + strand, within Rru_A1740at 2031.950 kb on + strand, within Rru_A1740at 2031.951 kb on - strand, within Rru_A1740at 2032.063 kb on + strandat 2032.063 kb on + strandat 2032.063 kb on + strandat 2032.063 kb on + strandat 2032.064 kb on - strandat 2032.064 kb on - strandat 2032.110 kb on - strandat 2032.307 kb on + strand, within Rru_A1741at 2032.369 kb on + strand, within Rru_A1741at 2032.370 kb on - strand, within Rru_A1741at 2032.370 kb on - strand, within Rru_A1741at 2032.690 kb on - strand, within Rru_A1741at 2032.861 kb on + strandat 2032.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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2,030,953 - -1.0
2,031,325 - -1.6
2,031,325 - -0.4
2,031,344 - -1.2
2,031,344 - -0.0
2,031,401 - -0.0
2,031,537 + -0.0
2,031,537 + -2.0
2,031,537 + -0.9
2,031,537 + +1.6
2,031,538 - -1.0
2,031,539 + -0.0
2,031,540 - -0.0
2,031,540 - -3.4
2,031,540 - -0.0
2,031,541 + -0.0
2,031,541 + -0.0
2,031,542 - -0.0
2,031,542 - -0.8
2,031,542 - +1.6
2,031,542 - -0.0
2,031,627 + -1.0
2,031,627 + -0.0
2,031,628 - -1.6
2,031,628 - -2.8
2,031,687 - +0.6
2,031,826 + Rru_A1740 0.48 -1.0
2,031,826 + Rru_A1740 0.48 -1.0
2,031,827 - Rru_A1740 0.48 -2.3
2,031,827 - Rru_A1740 0.48 -2.2
2,031,827 - Rru_A1740 0.48 -2.1
2,031,827 - Rru_A1740 0.48 -2.6
2,031,932 + Rru_A1740 0.79 -0.0
2,031,950 + Rru_A1740 0.85 -0.0
2,031,951 - Rru_A1740 0.85 -1.2
2,032,063 + -0.0
2,032,063 + -0.0
2,032,063 + -2.0
2,032,063 + -0.6
2,032,064 - -0.0
2,032,064 - -2.6
2,032,110 - -0.0
2,032,307 + Rru_A1741 0.33 -1.0
2,032,369 + Rru_A1741 0.41 +0.4
2,032,370 - Rru_A1741 0.41 -0.0
2,032,370 - Rru_A1741 0.41 +0.1
2,032,690 - Rru_A1741 0.79 -0.0
2,032,861 + -0.0
2,032,972 - -1.0

Or see this region's nucleotide sequence