Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1737

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1735 and Rru_A1736 are separated by 363 nucleotidesRru_A1736 and Rru_A1737 are separated by 5 nucleotidesRru_A1737 and Rru_A1738 are separated by 39 nucleotidesRru_A1738 and Rru_A1739 are separated by 72 nucleotides Rru_A1735: Rru_A1735 - hypothetical protein (NCBI), at 2,028,832 to 2,029,596 _A1735 Rru_A1736: Rru_A1736 - hypothetical protein (NCBI), at 2,029,960 to 2,030,223 _A1736 Rru_A1737: Rru_A1737 - hypothetical protein (NCBI), at 2,030,229 to 2,030,507 _A1737 Rru_A1738: Rru_A1738 - Protein of unknown function UPF0150 (NCBI), at 2,030,547 to 2,030,933 _A1738 Rru_A1739: Rru_A1739 - hypothetical protein (NCBI), at 2,031,006 to 2,031,200 _A1739 Position (kb) 2030 2031Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2029.589 kb on - strandat 2029.648 kb on - strandat 2029.648 kb on - strandat 2029.687 kb on + strandat 2029.763 kb on + strandat 2029.763 kb on + strandat 2029.764 kb on - strandat 2029.772 kb on + strandat 2029.772 kb on + strandat 2029.786 kb on + strandat 2029.786 kb on + strandat 2029.787 kb on - strandat 2029.911 kb on + strandat 2029.991 kb on + strand, within Rru_A1736at 2029.991 kb on + strand, within Rru_A1736at 2029.991 kb on + strand, within Rru_A1736at 2029.991 kb on + strand, within Rru_A1736at 2029.991 kb on + strand, within Rru_A1736at 2029.992 kb on - strand, within Rru_A1736at 2029.992 kb on - strand, within Rru_A1736at 2029.992 kb on - strand, within Rru_A1736at 2029.992 kb on - strand, within Rru_A1736at 2030.240 kb on + strandat 2030.240 kb on + strandat 2030.240 kb on + strandat 2030.299 kb on - strand, within Rru_A1737at 2030.299 kb on - strand, within Rru_A1737at 2030.505 kb on + strandat 2030.505 kb on + strandat 2030.953 kb on - strandat 2031.325 kb on - strandat 2031.325 kb on - strandat 2031.344 kb on - strandat 2031.344 kb on - strandat 2031.401 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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2,029,589 - -0.0
2,029,648 - -0.7
2,029,648 - -0.0
2,029,687 + -1.4
2,029,763 + -2.6
2,029,763 + -0.0
2,029,764 - -0.0
2,029,772 + -1.8
2,029,772 + -0.0
2,029,786 + -1.9
2,029,786 + -2.3
2,029,787 - +2.7
2,029,911 + +3.9
2,029,991 + Rru_A1736 0.12 -1.6
2,029,991 + Rru_A1736 0.12 -2.5
2,029,991 + Rru_A1736 0.12 -1.4
2,029,991 + Rru_A1736 0.12 -1.7
2,029,991 + Rru_A1736 0.12 -1.5
2,029,992 - Rru_A1736 0.12 -2.1
2,029,992 - Rru_A1736 0.12 -1.6
2,029,992 - Rru_A1736 0.12 -1.8
2,029,992 - Rru_A1736 0.12 -2.3
2,030,240 + -1.0
2,030,240 + -0.0
2,030,240 + -0.0
2,030,299 - Rru_A1737 0.25 -1.3
2,030,299 - Rru_A1737 0.25 -2.3
2,030,505 + -0.0
2,030,505 + -3.2
2,030,953 - -1.0
2,031,325 - -1.6
2,031,325 - -0.4
2,031,344 - -1.2
2,031,344 - -0.0
2,031,401 - -0.0

Or see this region's nucleotide sequence