Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1735 and Rru_A1736 are separated by 363 nucleotides Rru_A1736 and Rru_A1737 are separated by 5 nucleotides Rru_A1737 and Rru_A1738 are separated by 39 nucleotides Rru_A1738 and Rru_A1739 are separated by 72 nucleotides
Rru_A1735: Rru_A1735 - hypothetical protein (NCBI), at 2,028,832 to 2,029,596
_A1735
Rru_A1736: Rru_A1736 - hypothetical protein (NCBI), at 2,029,960 to 2,030,223
_A1736
Rru_A1737: Rru_A1737 - hypothetical protein (NCBI), at 2,030,229 to 2,030,507
_A1737
Rru_A1738: Rru_A1738 - Protein of unknown function UPF0150 (NCBI), at 2,030,547 to 2,030,933
_A1738
Rru_A1739: Rru_A1739 - hypothetical protein (NCBI), at 2,031,006 to 2,031,200
_A1739
Position (kb)
2029
2030
2031 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2029.044 kb on + strand, within Rru_A1735 at 2029.589 kb on - strand at 2029.648 kb on - strand at 2029.648 kb on - strand at 2029.687 kb on + strand at 2029.763 kb on + strand at 2029.763 kb on + strand at 2029.764 kb on - strand at 2029.772 kb on + strand at 2029.772 kb on + strand at 2029.786 kb on + strand at 2029.786 kb on + strand at 2029.787 kb on - strand at 2029.911 kb on + strand at 2029.991 kb on + strand, within Rru_A1736 at 2029.991 kb on + strand, within Rru_A1736 at 2029.991 kb on + strand, within Rru_A1736 at 2029.991 kb on + strand, within Rru_A1736 at 2029.991 kb on + strand, within Rru_A1736 at 2029.992 kb on - strand, within Rru_A1736 at 2029.992 kb on - strand, within Rru_A1736 at 2029.992 kb on - strand, within Rru_A1736 at 2029.992 kb on - strand, within Rru_A1736 at 2030.240 kb on + strand at 2030.240 kb on + strand at 2030.240 kb on + strand at 2030.299 kb on - strand, within Rru_A1737 at 2030.299 kb on - strand, within Rru_A1737 at 2030.505 kb on + strand at 2030.505 kb on + strand at 2030.953 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 2,029,044 + Rru_A1735 0.28 -2.3 2,029,589 - -0.0 2,029,648 - -0.7 2,029,648 - -0.0 2,029,687 + -1.4 2,029,763 + -2.6 2,029,763 + -0.0 2,029,764 - -0.0 2,029,772 + -1.8 2,029,772 + -0.0 2,029,786 + -1.9 2,029,786 + -2.3 2,029,787 - +2.7 2,029,911 + +3.9 2,029,991 + Rru_A1736 0.12 -1.6 2,029,991 + Rru_A1736 0.12 -2.5 2,029,991 + Rru_A1736 0.12 -1.4 2,029,991 + Rru_A1736 0.12 -1.7 2,029,991 + Rru_A1736 0.12 -1.5 2,029,992 - Rru_A1736 0.12 -2.1 2,029,992 - Rru_A1736 0.12 -1.6 2,029,992 - Rru_A1736 0.12 -1.8 2,029,992 - Rru_A1736 0.12 -2.3 2,030,240 + -1.0 2,030,240 + -0.0 2,030,240 + -0.0 2,030,299 - Rru_A1737 0.25 -1.3 2,030,299 - Rru_A1737 0.25 -2.3 2,030,505 + -0.0 2,030,505 + -3.2 2,030,953 - -1.0
Or see this region's nucleotide sequence