Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1624 and Rru_A1625 are separated by 195 nucleotides Rru_A1625 and Rru_A1626 are separated by 18 nucleotides Rru_A1626 and Rru_A1627 are separated by 110 nucleotides Rru_A1627 and Rru_A1628 overlap by 1 nucleotides Rru_A1628 and Rru_A1629 are separated by 89 nucleotides
Rru_A1624: Rru_A1624 - hypothetical protein (NCBI), at 1,917,139 to 1,917,582
_A1624
Rru_A1625: Rru_A1625 - hypothetical protein (NCBI), at 1,917,778 to 1,918,545
_A1625
Rru_A1626: Rru_A1626 - methyltransferase (NCBI), at 1,918,564 to 1,919,172
_A1626
Rru_A1627: Rru_A1627 - hypothetical protein (NCBI), at 1,919,283 to 1,919,618
_A1627
Rru_A1628: Rru_A1628 - hypothetical protein (NCBI), at 1,919,618 to 1,919,848
_A1628
Rru_A1629: Rru_A1629 - hypothetical protein (NCBI), at 1,919,938 to 1,921,839
_A1629
Position (kb)
1918
1919
1920 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1917.577 kb on + strand at 1917.577 kb on + strand at 1917.577 kb on + strand at 1917.577 kb on + strand at 1917.577 kb on + strand at 1917.577 kb on + strand at 1917.577 kb on + strand at 1917.577 kb on + strand at 1917.577 kb on + strand at 1917.578 kb on - strand at 1917.718 kb on + strand at 1917.719 kb on - strand at 1917.750 kb on - strand at 1917.791 kb on - strand at 1917.792 kb on + strand at 1917.795 kb on + strand at 1917.795 kb on + strand at 1917.811 kb on - strand at 1917.831 kb on - strand at 1917.886 kb on - strand, within Rru_A1625 at 1917.939 kb on + strand, within Rru_A1625 at 1918.014 kb on - strand, within Rru_A1625 at 1918.039 kb on + strand, within Rru_A1625 at 1918.039 kb on + strand, within Rru_A1625 at 1918.040 kb on - strand, within Rru_A1625 at 1918.040 kb on - strand, within Rru_A1625 at 1918.043 kb on + strand, within Rru_A1625 at 1918.044 kb on - strand, within Rru_A1625 at 1918.075 kb on + strand, within Rru_A1625 at 1918.075 kb on + strand, within Rru_A1625 at 1918.132 kb on + strand, within Rru_A1625 at 1918.132 kb on + strand, within Rru_A1625 at 1918.133 kb on - strand, within Rru_A1625 at 1918.410 kb on + strand, within Rru_A1625 at 1918.410 kb on + strand, within Rru_A1625 at 1918.410 kb on + strand, within Rru_A1625 at 1918.410 kb on + strand, within Rru_A1625 at 1918.410 kb on + strand, within Rru_A1625 at 1918.411 kb on - strand, within Rru_A1625 at 1918.411 kb on - strand, within Rru_A1625 at 1918.411 kb on - strand, within Rru_A1625 at 1918.488 kb on + strand at 1918.544 kb on - strand at 1918.544 kb on - strand at 1918.596 kb on + strand at 1918.899 kb on + strand, within Rru_A1626 at 1918.900 kb on - strand, within Rru_A1626 at 1918.900 kb on - strand, within Rru_A1626 at 1919.041 kb on + strand, within Rru_A1626 at 1919.041 kb on + strand, within Rru_A1626 at 1919.222 kb on + strand at 1919.234 kb on - strand at 1919.377 kb on + strand, within Rru_A1627 at 1919.378 kb on - strand, within Rru_A1627 at 1919.378 kb on - strand, within Rru_A1627 at 1919.378 kb on - strand, within Rru_A1627 at 1920.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 1,917,577 + -1.0 1,917,577 + -1.1 1,917,577 + +0.0 1,917,577 + +1.0 1,917,577 + -2.1 1,917,577 + +0.0 1,917,577 + -2.7 1,917,577 + +0.0 1,917,577 + -2.4 1,917,578 - +0.0 1,917,718 + -1.6 1,917,719 - -2.2 1,917,750 - +0.0 1,917,791 - +0.0 1,917,792 + -2.1 1,917,795 + +0.0 1,917,795 + -3.0 1,917,811 - -2.6 1,917,831 - -1.5 1,917,886 - Rru_A1625 0.14 +0.0 1,917,939 + Rru_A1625 0.21 +0.0 1,918,014 - Rru_A1625 0.31 +3.2 1,918,039 + Rru_A1625 0.34 -2.6 1,918,039 + Rru_A1625 0.34 -1.6 1,918,040 - Rru_A1625 0.34 +0.0 1,918,040 - Rru_A1625 0.34 -1.0 1,918,043 + Rru_A1625 0.35 -1.8 1,918,044 - Rru_A1625 0.35 -0.7 1,918,075 + Rru_A1625 0.39 +0.0 1,918,075 + Rru_A1625 0.39 -2.5 1,918,132 + Rru_A1625 0.46 -0.9 1,918,132 + Rru_A1625 0.46 +0.0 1,918,133 - Rru_A1625 0.46 -3.0 1,918,410 + Rru_A1625 0.82 +0.8 1,918,410 + Rru_A1625 0.82 -0.8 1,918,410 + Rru_A1625 0.82 +0.0 1,918,410 + Rru_A1625 0.82 -2.6 1,918,410 + Rru_A1625 0.82 -0.6 1,918,411 - Rru_A1625 0.82 -1.0 1,918,411 - Rru_A1625 0.82 +0.0 1,918,411 - Rru_A1625 0.82 +0.0 1,918,488 + +0.1 1,918,544 - -2.1 1,918,544 - +0.3 1,918,596 + -0.6 1,918,899 + Rru_A1626 0.55 -1.0 1,918,900 - Rru_A1626 0.55 -1.8 1,918,900 - Rru_A1626 0.55 -2.5 1,919,041 + Rru_A1626 0.78 +0.0 1,919,041 + Rru_A1626 0.78 -1.7 1,919,222 + -1.7 1,919,234 - +0.0 1,919,377 + Rru_A1627 0.28 -1.8 1,919,378 - Rru_A1627 0.28 +0.0 1,919,378 - Rru_A1627 0.28 +0.0 1,919,378 - Rru_A1627 0.28 -0.2 1,920,093 - +0.0
Or see this region's nucleotide sequence