Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1626

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1624 and Rru_A1625 are separated by 195 nucleotidesRru_A1625 and Rru_A1626 are separated by 18 nucleotidesRru_A1626 and Rru_A1627 are separated by 110 nucleotidesRru_A1627 and Rru_A1628 overlap by 1 nucleotidesRru_A1628 and Rru_A1629 are separated by 89 nucleotides Rru_A1624: Rru_A1624 - hypothetical protein (NCBI), at 1,917,139 to 1,917,582 _A1624 Rru_A1625: Rru_A1625 - hypothetical protein (NCBI), at 1,917,778 to 1,918,545 _A1625 Rru_A1626: Rru_A1626 - methyltransferase (NCBI), at 1,918,564 to 1,919,172 _A1626 Rru_A1627: Rru_A1627 - hypothetical protein (NCBI), at 1,919,283 to 1,919,618 _A1627 Rru_A1628: Rru_A1628 - hypothetical protein (NCBI), at 1,919,618 to 1,919,848 _A1628 Rru_A1629: Rru_A1629 - hypothetical protein (NCBI), at 1,919,938 to 1,921,839 _A1629 Position (kb) 1918 1919 1920Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1917.577 kb on + strandat 1917.577 kb on + strandat 1917.577 kb on + strandat 1917.577 kb on + strandat 1917.577 kb on + strandat 1917.577 kb on + strandat 1917.577 kb on + strandat 1917.577 kb on + strandat 1917.577 kb on + strandat 1917.578 kb on - strandat 1917.718 kb on + strandat 1917.719 kb on - strandat 1917.750 kb on - strandat 1917.791 kb on - strandat 1917.792 kb on + strandat 1917.795 kb on + strandat 1917.795 kb on + strandat 1917.811 kb on - strandat 1917.831 kb on - strandat 1917.886 kb on - strand, within Rru_A1625at 1917.939 kb on + strand, within Rru_A1625at 1918.014 kb on - strand, within Rru_A1625at 1918.039 kb on + strand, within Rru_A1625at 1918.039 kb on + strand, within Rru_A1625at 1918.040 kb on - strand, within Rru_A1625at 1918.040 kb on - strand, within Rru_A1625at 1918.043 kb on + strand, within Rru_A1625at 1918.044 kb on - strand, within Rru_A1625at 1918.075 kb on + strand, within Rru_A1625at 1918.075 kb on + strand, within Rru_A1625at 1918.132 kb on + strand, within Rru_A1625at 1918.132 kb on + strand, within Rru_A1625at 1918.133 kb on - strand, within Rru_A1625at 1918.410 kb on + strand, within Rru_A1625at 1918.410 kb on + strand, within Rru_A1625at 1918.410 kb on + strand, within Rru_A1625at 1918.410 kb on + strand, within Rru_A1625at 1918.410 kb on + strand, within Rru_A1625at 1918.411 kb on - strand, within Rru_A1625at 1918.411 kb on - strand, within Rru_A1625at 1918.411 kb on - strand, within Rru_A1625at 1918.488 kb on + strandat 1918.544 kb on - strandat 1918.544 kb on - strandat 1918.596 kb on + strandat 1918.899 kb on + strand, within Rru_A1626at 1918.900 kb on - strand, within Rru_A1626at 1918.900 kb on - strand, within Rru_A1626at 1919.041 kb on + strand, within Rru_A1626at 1919.041 kb on + strand, within Rru_A1626at 1919.222 kb on + strandat 1919.234 kb on - strandat 1919.377 kb on + strand, within Rru_A1627at 1919.378 kb on - strand, within Rru_A1627at 1919.378 kb on - strand, within Rru_A1627at 1919.378 kb on - strand, within Rru_A1627at 1920.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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1,917,577 + -1.0
1,917,577 + -1.1
1,917,577 + +0.0
1,917,577 + +1.0
1,917,577 + -2.1
1,917,577 + +0.0
1,917,577 + -2.7
1,917,577 + +0.0
1,917,577 + -2.4
1,917,578 - +0.0
1,917,718 + -1.6
1,917,719 - -2.2
1,917,750 - +0.0
1,917,791 - +0.0
1,917,792 + -2.1
1,917,795 + +0.0
1,917,795 + -3.0
1,917,811 - -2.6
1,917,831 - -1.5
1,917,886 - Rru_A1625 0.14 +0.0
1,917,939 + Rru_A1625 0.21 +0.0
1,918,014 - Rru_A1625 0.31 +3.2
1,918,039 + Rru_A1625 0.34 -2.6
1,918,039 + Rru_A1625 0.34 -1.6
1,918,040 - Rru_A1625 0.34 +0.0
1,918,040 - Rru_A1625 0.34 -1.0
1,918,043 + Rru_A1625 0.35 -1.8
1,918,044 - Rru_A1625 0.35 -0.7
1,918,075 + Rru_A1625 0.39 +0.0
1,918,075 + Rru_A1625 0.39 -2.5
1,918,132 + Rru_A1625 0.46 -0.9
1,918,132 + Rru_A1625 0.46 +0.0
1,918,133 - Rru_A1625 0.46 -3.0
1,918,410 + Rru_A1625 0.82 +0.8
1,918,410 + Rru_A1625 0.82 -0.8
1,918,410 + Rru_A1625 0.82 +0.0
1,918,410 + Rru_A1625 0.82 -2.6
1,918,410 + Rru_A1625 0.82 -0.6
1,918,411 - Rru_A1625 0.82 -1.0
1,918,411 - Rru_A1625 0.82 +0.0
1,918,411 - Rru_A1625 0.82 +0.0
1,918,488 + +0.1
1,918,544 - -2.1
1,918,544 - +0.3
1,918,596 + -0.6
1,918,899 + Rru_A1626 0.55 -1.0
1,918,900 - Rru_A1626 0.55 -1.8
1,918,900 - Rru_A1626 0.55 -2.5
1,919,041 + Rru_A1626 0.78 +0.0
1,919,041 + Rru_A1626 0.78 -1.7
1,919,222 + -1.7
1,919,234 - +0.0
1,919,377 + Rru_A1627 0.28 -1.8
1,919,378 - Rru_A1627 0.28 +0.0
1,919,378 - Rru_A1627 0.28 +0.0
1,919,378 - Rru_A1627 0.28 -0.2
1,920,093 - +0.0

Or see this region's nucleotide sequence