Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1513

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1511 and Rru_A1512 are separated by 264 nucleotidesRru_A1512 and Rru_A1513 overlap by 4 nucleotides Rru_A1511: Rru_A1511 - Glycosyl transferase, family 2 (NCBI), at 1,784,681 to 1,785,760 _A1511 Rru_A1512: Rru_A1512 - ISSo9, nucleotidyltransferase domain protein (NCBI), at 1,786,025 to 1,786,315 _A1512 Rru_A1513: Rru_A1513 - hypothetical protein (NCBI), at 1,786,312 to 1,786,719 _A1513 Position (kb) 1786 1787Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1785.494 kb on + strand, within Rru_A1511at 1785.495 kb on - strand, within Rru_A1511at 1785.495 kb on - strand, within Rru_A1511at 1785.796 kb on + strandat 1785.821 kb on + strandat 1785.821 kb on + strandat 1785.821 kb on + strandat 1785.821 kb on + strandat 1785.821 kb on + strandat 1785.822 kb on - strandat 1785.822 kb on - strandat 1785.822 kb on - strandat 1785.896 kb on + strandat 1785.897 kb on - strandat 1785.930 kb on - strandat 1785.941 kb on + strandat 1785.942 kb on - strandat 1785.944 kb on + strandat 1785.944 kb on + strandat 1785.945 kb on - strandat 1785.964 kb on + strandat 1785.964 kb on + strandat 1785.965 kb on - strandat 1785.965 kb on - strandat 1786.076 kb on - strand, within Rru_A1512at 1786.076 kb on - strand, within Rru_A1512at 1786.205 kb on - strand, within Rru_A1512at 1786.252 kb on + strand, within Rru_A1512at 1786.252 kb on + strand, within Rru_A1512at 1786.252 kb on + strand, within Rru_A1512at 1786.252 kb on + strand, within Rru_A1512at 1786.252 kb on + strand, within Rru_A1512at 1786.252 kb on + strand, within Rru_A1512at 1786.252 kb on + strand, within Rru_A1512at 1786.253 kb on - strand, within Rru_A1512at 1786.253 kb on - strand, within Rru_A1512at 1786.265 kb on - strand, within Rru_A1512at 1786.399 kb on + strand, within Rru_A1513at 1786.400 kb on - strand, within Rru_A1513at 1786.597 kb on + strand, within Rru_A1513at 1786.598 kb on - strand, within Rru_A1513at 1786.723 kb on + strandat 1786.724 kb on - strandat 1786.724 kb on - strandat 1786.724 kb on - strandat 1786.739 kb on - strandat 1786.881 kb on - strandat 1787.090 kb on - strandat 1787.253 kb on - strandat 1787.253 kb on - strandat 1787.253 kb on - strandat 1787.286 kb on + strandat 1787.287 kb on - strandat 1787.312 kb on - strandat 1787.326 kb on + strandat 1787.327 kb on - strandat 1787.337 kb on - strandat 1787.337 kb on - strandat 1787.350 kb on + strandat 1787.351 kb on - strandat 1787.369 kb on + strandat 1787.370 kb on - strandat 1787.493 kb on + strandat 1787.503 kb on - strandat 1787.505 kb on + strandat 1787.505 kb on + strandat 1787.633 kb on + strandat 1787.633 kb on + strandat 1787.633 kb on + strandat 1787.633 kb on + strandat 1787.634 kb on - strandat 1787.634 kb on - strandat 1787.634 kb on - strandat 1787.634 kb on - strandat 1787.635 kb on + strandat 1787.635 kb on + strandat 1787.636 kb on - strandat 1787.636 kb on - strandat 1787.645 kb on + strandat 1787.645 kb on + strandat 1787.670 kb on - strandat 1787.719 kb on + strandat 1787.719 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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1,785,494 + Rru_A1511 0.75 -2.5
1,785,495 - Rru_A1511 0.75 +0.2
1,785,495 - Rru_A1511 0.75 -1.0
1,785,796 + -2.9
1,785,821 + -1.3
1,785,821 + -0.3
1,785,821 + -3.2
1,785,821 + -1.4
1,785,821 + -1.0
1,785,822 - -1.6
1,785,822 - +0.0
1,785,822 - -1.0
1,785,896 + +1.7
1,785,897 - +0.0
1,785,930 - -0.8
1,785,941 + -2.4
1,785,942 - +0.0
1,785,944 + +0.0
1,785,944 + +0.0
1,785,945 - -1.0
1,785,964 + +0.0
1,785,964 + -1.2
1,785,965 - +0.0
1,785,965 - -2.9
1,786,076 - Rru_A1512 0.18 -1.6
1,786,076 - Rru_A1512 0.18 +0.0
1,786,205 - Rru_A1512 0.62 +0.0
1,786,252 + Rru_A1512 0.78 +0.0
1,786,252 + Rru_A1512 0.78 -1.8
1,786,252 + Rru_A1512 0.78 -1.3
1,786,252 + Rru_A1512 0.78 -1.1
1,786,252 + Rru_A1512 0.78 +0.0
1,786,252 + Rru_A1512 0.78 -0.1
1,786,252 + Rru_A1512 0.78 -1.3
1,786,253 - Rru_A1512 0.78 +0.0
1,786,253 - Rru_A1512 0.78 -2.4
1,786,265 - Rru_A1512 0.82 +1.0
1,786,399 + Rru_A1513 0.21 -1.7
1,786,400 - Rru_A1513 0.22 -2.5
1,786,597 + Rru_A1513 0.70 -1.0
1,786,598 - Rru_A1513 0.70 -1.2
1,786,723 + +0.0
1,786,724 - -1.6
1,786,724 - -4.1
1,786,724 - +0.7
1,786,739 - +0.0
1,786,881 - -2.4
1,787,090 - +0.0
1,787,253 - -2.5
1,787,253 - +1.0
1,787,253 - +0.0
1,787,286 + +1.0
1,787,287 - -3.1
1,787,312 - +0.0
1,787,326 + -2.1
1,787,327 - -1.6
1,787,337 - +0.0
1,787,337 - -1.6
1,787,350 + -1.2
1,787,351 - +0.3
1,787,369 + -0.8
1,787,370 - +3.0
1,787,493 + -1.1
1,787,503 - -2.6
1,787,505 + +0.0
1,787,505 + +0.0
1,787,633 + +0.0
1,787,633 + +0.0
1,787,633 + +0.0
1,787,633 + -1.3
1,787,634 - +2.8
1,787,634 - -1.9
1,787,634 - -1.8
1,787,634 - -0.9
1,787,635 + -2.2
1,787,635 + -2.2
1,787,636 - -1.0
1,787,636 - -3.0
1,787,645 + +0.0
1,787,645 + -1.3
1,787,670 - -2.0
1,787,719 + -1.1
1,787,719 + +0.0

Or see this region's nucleotide sequence