Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1255 and Rru_A1256 are separated by 163 nucleotides Rru_A1256 and Rru_A1257 are separated by 307 nucleotides Rru_A1257 and Rru_A1258 are separated by 365 nucleotides
Rru_A1255: Rru_A1255 - Transcriptional Regulator, GntR family (NCBI), at 1,476,687 to 1,477,421
_A1255
Rru_A1256: Rru_A1256 - hypothetical protein (NCBI), at 1,477,585 to 1,478,109
_A1256
Rru_A1257: Rru_A1257 - hypothetical protein (NCBI), at 1,478,417 to 1,479,505
_A1257
Rru_A1258: Rru_A1258 - hypothetical protein (NCBI), at 1,479,871 to 1,480,569
_A1258
Position (kb)
1478
1479
1480 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1477.480 kb on + strand at 1477.481 kb on - strand at 1477.481 kb on - strand at 1477.481 kb on - strand at 1477.481 kb on - strand at 1477.539 kb on + strand at 1477.681 kb on + strand, within Rru_A1256 at 1477.682 kb on - strand, within Rru_A1256 at 1477.834 kb on + strand, within Rru_A1256 at 1477.835 kb on - strand, within Rru_A1256 at 1478.137 kb on + strand at 1478.159 kb on + strand at 1478.315 kb on + strand at 1478.316 kb on - strand at 1478.383 kb on - strand at 1478.392 kb on + strand at 1478.392 kb on + strand at 1478.411 kb on + strand at 1478.437 kb on + strand at 1478.437 kb on + strand at 1478.438 kb on - strand at 1478.477 kb on - strand at 1478.533 kb on - strand, within Rru_A1257 at 1478.699 kb on + strand, within Rru_A1257 at 1478.709 kb on - strand, within Rru_A1257 at 1478.756 kb on - strand, within Rru_A1257 at 1478.756 kb on - strand, within Rru_A1257 at 1478.853 kb on - strand, within Rru_A1257 at 1478.853 kb on - strand, within Rru_A1257 at 1478.874 kb on + strand, within Rru_A1257 at 1478.874 kb on + strand, within Rru_A1257 at 1478.874 kb on + strand, within Rru_A1257 at 1478.874 kb on + strand, within Rru_A1257 at 1478.874 kb on + strand, within Rru_A1257 at 1478.874 kb on + strand, within Rru_A1257 at 1478.875 kb on - strand, within Rru_A1257 at 1478.961 kb on + strand, within Rru_A1257 at 1478.993 kb on - strand, within Rru_A1257 at 1479.084 kb on + strand, within Rru_A1257 at 1479.084 kb on + strand, within Rru_A1257 at 1479.084 kb on + strand, within Rru_A1257 at 1479.084 kb on + strand, within Rru_A1257 at 1479.085 kb on - strand, within Rru_A1257 at 1479.173 kb on + strand, within Rru_A1257 at 1479.174 kb on - strand, within Rru_A1257 at 1479.229 kb on + strand, within Rru_A1257 at 1479.290 kb on + strand, within Rru_A1257 at 1479.291 kb on - strand, within Rru_A1257 at 1479.482 kb on - strand at 1479.497 kb on + strand at 1479.499 kb on + strand at 1479.504 kb on - strand at 1479.535 kb on + strand at 1479.580 kb on + strand at 1479.581 kb on - strand at 1479.694 kb on - strand at 1479.694 kb on - strand at 1479.769 kb on - strand at 1479.794 kb on - strand at 1479.794 kb on - strand at 1479.794 kb on - strand at 1479.806 kb on - strand at 1479.839 kb on + strand at 1479.844 kb on + strand at 1479.863 kb on + strand at 1479.863 kb on + strand at 1479.864 kb on - strand at 1479.864 kb on - strand at 1479.866 kb on + strand at 1479.866 kb on + strand at 1479.867 kb on - strand at 1479.867 kb on - strand at 1479.872 kb on + strand at 1480.316 kb on + strand, within Rru_A1258 at 1480.433 kb on + strand, within Rru_A1258
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 1,477,480 + -0.2 1,477,481 - +0.2 1,477,481 - +0.2 1,477,481 - -2.4 1,477,481 - -1.8 1,477,539 + -1.4 1,477,681 + Rru_A1256 0.18 +0.8 1,477,682 - Rru_A1256 0.18 -3.2 1,477,834 + Rru_A1256 0.47 +0.2 1,477,835 - Rru_A1256 0.48 -1.8 1,478,137 + -0.8 1,478,159 + +0.2 1,478,315 + +0.2 1,478,316 - +0.2 1,478,383 - +0.2 1,478,392 + +0.2 1,478,392 + +0.2 1,478,411 + -1.1 1,478,437 + -0.1 1,478,437 + -2.6 1,478,438 - -0.7 1,478,477 - +0.2 1,478,533 - Rru_A1257 0.11 +0.2 1,478,699 + Rru_A1257 0.26 +0.2 1,478,709 - Rru_A1257 0.27 -0.7 1,478,756 - Rru_A1257 0.31 -1.0 1,478,756 - Rru_A1257 0.31 -1.6 1,478,853 - Rru_A1257 0.40 -2.0 1,478,853 - Rru_A1257 0.40 +0.2 1,478,874 + Rru_A1257 0.42 -1.6 1,478,874 + Rru_A1257 0.42 -0.8 1,478,874 + Rru_A1257 0.42 -0.0 1,478,874 + Rru_A1257 0.42 -2.0 1,478,874 + Rru_A1257 0.42 +0.2 1,478,874 + Rru_A1257 0.42 -2.2 1,478,875 - Rru_A1257 0.42 +0.2 1,478,961 + Rru_A1257 0.50 -2.7 1,478,993 - Rru_A1257 0.53 -1.4 1,479,084 + Rru_A1257 0.61 -1.8 1,479,084 + Rru_A1257 0.61 +0.2 1,479,084 + Rru_A1257 0.61 -1.6 1,479,084 + Rru_A1257 0.61 -2.0 1,479,085 - Rru_A1257 0.61 +0.2 1,479,173 + Rru_A1257 0.69 -0.5 1,479,174 - Rru_A1257 0.70 -0.8 1,479,229 + Rru_A1257 0.75 -3.0 1,479,290 + Rru_A1257 0.80 -1.7 1,479,291 - Rru_A1257 0.80 +0.8 1,479,482 - +1.0 1,479,497 + +0.1 1,479,499 + +0.2 1,479,504 - -1.6 1,479,535 + +0.2 1,479,580 + +0.2 1,479,581 - +0.2 1,479,694 - +0.5 1,479,694 - +0.2 1,479,769 - +0.2 1,479,794 - -1.0 1,479,794 - -2.1 1,479,794 - -1.0 1,479,806 - +0.2 1,479,839 + -1.9 1,479,844 + -0.8 1,479,863 + -3.5 1,479,863 + +0.2 1,479,864 - -2.3 1,479,864 - -2.6 1,479,866 + +0.2 1,479,866 + +0.2 1,479,867 - -2.3 1,479,867 - -1.4 1,479,872 + +0.2 1,480,316 + Rru_A1258 0.64 +1.4 1,480,433 + Rru_A1258 0.80 +0.2
Or see this region's nucleotide sequence