Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1104

Experiment: acetate; Light intensity 38 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1103 and Rru_A1104 are separated by 213 nucleotidesRru_A1104 and Rru_A1105 are separated by 118 nucleotides Rru_A1103: Rru_A1103 - Phenazine biosynthesis PhzC/PhzF protein (NCBI), at 1,295,549 to 1,296,382 _A1103 Rru_A1104: Rru_A1104 - Phosphoserine aminotransferase, Methanosarcina type (NCBI), at 1,296,596 to 1,297,750 _A1104 Rru_A1105: Rru_A1105 - tRNA synthetase, class II (G, H, P and S) (NCBI), at 1,297,869 to 1,299,023 _A1105 Position (kb) 1296 1297 1298Strain fitness (log2 ratio) -1 0 1at 1297.846 kb on + strandat 1297.998 kb on + strand, within Rru_A1105at 1298.199 kb on + strand, within Rru_A1105at 1298.694 kb on + strand, within Rru_A1105at 1298.694 kb on + strand, within Rru_A1105at 1298.696 kb on + strand, within Rru_A1105at 1298.696 kb on + strand, within Rru_A1105at 1298.696 kb on + strand, within Rru_A1105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
remove
1,297,846 + -0.9
1,297,998 + Rru_A1105 0.11 +0.1
1,298,199 + Rru_A1105 0.29 +0.1
1,298,694 + Rru_A1105 0.71 +0.1
1,298,694 + Rru_A1105 0.71 +0.1
1,298,696 + Rru_A1105 0.72 +0.1
1,298,696 + Rru_A1105 0.72 +0.1
1,298,696 + Rru_A1105 0.72 -0.9

Or see this region's nucleotide sequence