Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1031

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1030 and Rru_A1031 overlap by 4 nucleotidesRru_A1031 and Rru_A1032 are separated by 7 nucleotides Rru_A1030: Rru_A1030 - Amino acid permease-associated region (NCBI), at 1,219,044 to 1,220,468 _A1030 Rru_A1031: Rru_A1031 - Ethanolamine ammonia-lyase (NCBI), at 1,220,465 to 1,221,280 _A1031 Rru_A1032: Rru_A1032 - Ethanolamine ammonia lyase large subunit (NCBI), at 1,221,288 to 1,222,679 _A1032 Position (kb) 1220 1221 1222Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 1219.561 kb on + strand, within Rru_A1030at 1219.561 kb on + strand, within Rru_A1030at 1219.562 kb on - strand, within Rru_A1030at 1219.562 kb on - strand, within Rru_A1030at 1219.774 kb on + strand, within Rru_A1030at 1219.774 kb on + strand, within Rru_A1030at 1219.774 kb on + strand, within Rru_A1030at 1219.774 kb on + strand, within Rru_A1030at 1219.774 kb on + strand, within Rru_A1030at 1219.775 kb on - strand, within Rru_A1030at 1219.775 kb on - strand, within Rru_A1030at 1219.775 kb on - strand, within Rru_A1030at 1219.775 kb on - strand, within Rru_A1030at 1219.943 kb on + strand, within Rru_A1030at 1220.048 kb on + strand, within Rru_A1030at 1220.049 kb on - strand, within Rru_A1030at 1220.071 kb on + strand, within Rru_A1030at 1220.071 kb on + strand, within Rru_A1030at 1220.072 kb on - strand, within Rru_A1030at 1220.072 kb on - strand, within Rru_A1030at 1220.072 kb on - strand, within Rru_A1030at 1220.089 kb on - strand, within Rru_A1030at 1220.125 kb on + strand, within Rru_A1030at 1220.125 kb on + strand, within Rru_A1030at 1220.126 kb on - strand, within Rru_A1030at 1220.126 kb on - strand, within Rru_A1030at 1220.224 kb on + strand, within Rru_A1030at 1220.224 kb on + strand, within Rru_A1030at 1220.224 kb on + strand, within Rru_A1030at 1220.228 kb on + strand, within Rru_A1030at 1220.229 kb on - strand, within Rru_A1030at 1220.229 kb on - strand, within Rru_A1030at 1220.229 kb on - strand, within Rru_A1030at 1220.229 kb on - strand, within Rru_A1030at 1220.230 kb on + strand, within Rru_A1030at 1220.230 kb on + strand, within Rru_A1030at 1220.289 kb on - strand, within Rru_A1030at 1220.289 kb on - strand, within Rru_A1030at 1220.289 kb on - strand, within Rru_A1030at 1220.299 kb on + strand, within Rru_A1030at 1220.299 kb on + strand, within Rru_A1030at 1220.299 kb on + strand, within Rru_A1030at 1220.299 kb on + strand, within Rru_A1030at 1220.299 kb on + strand, within Rru_A1030at 1220.299 kb on + strand, within Rru_A1030at 1220.299 kb on + strand, within Rru_A1030at 1220.299 kb on + strand, within Rru_A1030at 1220.300 kb on - strand, within Rru_A1030at 1220.300 kb on - strand, within Rru_A1030at 1220.300 kb on - strand, within Rru_A1030at 1220.300 kb on - strand, within Rru_A1030at 1220.300 kb on - strand, within Rru_A1030at 1220.300 kb on - strand, within Rru_A1030at 1220.300 kb on - strand, within Rru_A1030at 1220.300 kb on - strand, within Rru_A1030at 1220.300 kb on - strand, within Rru_A1030at 1220.377 kb on + strandat 1220.378 kb on - strandat 1220.378 kb on - strandat 1220.474 kb on + strandat 1220.475 kb on - strandat 1220.475 kb on - strandat 1220.483 kb on + strandat 1220.483 kb on + strandat 1220.715 kb on + strand, within Rru_A1031at 1220.716 kb on - strand, within Rru_A1031at 1220.716 kb on - strand, within Rru_A1031at 1221.042 kb on + strand, within Rru_A1031at 1221.463 kb on + strand, within Rru_A1032at 1221.463 kb on + strand, within Rru_A1032at 1221.464 kb on - strand, within Rru_A1032at 1221.464 kb on - strand, within Rru_A1032at 1221.580 kb on + strand, within Rru_A1032at 1221.580 kb on + strand, within Rru_A1032at 1221.580 kb on + strand, within Rru_A1032at 1221.668 kb on - strand, within Rru_A1032at 1221.668 kb on - strand, within Rru_A1032at 1221.673 kb on + strand, within Rru_A1032at 1221.673 kb on + strand, within Rru_A1032at 1221.674 kb on - strand, within Rru_A1032at 1221.674 kb on - strand, within Rru_A1032at 1221.739 kb on + strand, within Rru_A1032at 1221.740 kb on - strand, within Rru_A1032at 1221.820 kb on + strand, within Rru_A1032at 1221.820 kb on + strand, within Rru_A1032at 1221.820 kb on + strand, within Rru_A1032at 1221.820 kb on + strand, within Rru_A1032at 1221.821 kb on - strand, within Rru_A1032at 1221.821 kb on - strand, within Rru_A1032at 1221.821 kb on - strand, within Rru_A1032at 1221.821 kb on - strand, within Rru_A1032

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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1,219,561 + Rru_A1030 0.36 +0.2
1,219,561 + Rru_A1030 0.36 +0.2
1,219,562 - Rru_A1030 0.36 +0.2
1,219,562 - Rru_A1030 0.36 +0.2
1,219,774 + Rru_A1030 0.51 -2.2
1,219,774 + Rru_A1030 0.51 +0.2
1,219,774 + Rru_A1030 0.51 +0.2
1,219,774 + Rru_A1030 0.51 -0.4
1,219,774 + Rru_A1030 0.51 +0.2
1,219,775 - Rru_A1030 0.51 -1.8
1,219,775 - Rru_A1030 0.51 -3.5
1,219,775 - Rru_A1030 0.51 +1.2
1,219,775 - Rru_A1030 0.51 -0.8
1,219,943 + Rru_A1030 0.63 +0.2
1,220,048 + Rru_A1030 0.70 +0.2
1,220,049 - Rru_A1030 0.71 -2.2
1,220,071 + Rru_A1030 0.72 -1.3
1,220,071 + Rru_A1030 0.72 -2.2
1,220,072 - Rru_A1030 0.72 -1.8
1,220,072 - Rru_A1030 0.72 +0.2
1,220,072 - Rru_A1030 0.72 -0.2
1,220,089 - Rru_A1030 0.73 -1.0
1,220,125 + Rru_A1030 0.76 -1.3
1,220,125 + Rru_A1030 0.76 -2.2
1,220,126 - Rru_A1030 0.76 -3.3
1,220,126 - Rru_A1030 0.76 -1.3
1,220,224 + Rru_A1030 0.83 -1.8
1,220,224 + Rru_A1030 0.83 -1.4
1,220,224 + Rru_A1030 0.83 -0.8
1,220,228 + Rru_A1030 0.83 -2.5
1,220,229 - Rru_A1030 0.83 +0.2
1,220,229 - Rru_A1030 0.83 -2.1
1,220,229 - Rru_A1030 0.83 -2.9
1,220,229 - Rru_A1030 0.83 +0.2
1,220,230 + Rru_A1030 0.83 +0.2
1,220,230 + Rru_A1030 0.83 -2.1
1,220,289 - Rru_A1030 0.87 -0.8
1,220,289 - Rru_A1030 0.87 +2.7
1,220,289 - Rru_A1030 0.87 +0.2
1,220,299 + Rru_A1030 0.88 -2.6
1,220,299 + Rru_A1030 0.88 -0.8
1,220,299 + Rru_A1030 0.88 -2.3
1,220,299 + Rru_A1030 0.88 +0.2
1,220,299 + Rru_A1030 0.88 -1.8
1,220,299 + Rru_A1030 0.88 -0.8
1,220,299 + Rru_A1030 0.88 +0.5
1,220,299 + Rru_A1030 0.88 +1.2
1,220,300 - Rru_A1030 0.88 -2.2
1,220,300 - Rru_A1030 0.88 +0.2
1,220,300 - Rru_A1030 0.88 +0.2
1,220,300 - Rru_A1030 0.88 +1.7
1,220,300 - Rru_A1030 0.88 -1.4
1,220,300 - Rru_A1030 0.88 -2.3
1,220,300 - Rru_A1030 0.88 +0.2
1,220,300 - Rru_A1030 0.88 -3.2
1,220,300 - Rru_A1030 0.88 +0.2
1,220,377 + -1.5
1,220,378 - -2.2
1,220,378 - +0.2
1,220,474 + -1.7
1,220,475 - -2.1
1,220,475 - -0.8
1,220,483 + +0.2
1,220,483 + -2.0
1,220,715 + Rru_A1031 0.31 -0.8
1,220,716 - Rru_A1031 0.31 -2.8
1,220,716 - Rru_A1031 0.31 -4.0
1,221,042 + Rru_A1031 0.71 -1.2
1,221,463 + Rru_A1032 0.13 +8.1
1,221,463 + Rru_A1032 0.13 +0.1
1,221,464 - Rru_A1032 0.13 -2.2
1,221,464 - Rru_A1032 0.13 -0.9
1,221,580 + Rru_A1032 0.21 -0.9
1,221,580 + Rru_A1032 0.21 -1.4
1,221,580 + Rru_A1032 0.21 -1.7
1,221,668 - Rru_A1032 0.27 +0.1
1,221,668 - Rru_A1032 0.27 -2.2
1,221,673 + Rru_A1032 0.28 +0.1
1,221,673 + Rru_A1032 0.28 +2.1
1,221,674 - Rru_A1032 0.28 -2.9
1,221,674 - Rru_A1032 0.28 +0.1
1,221,739 + Rru_A1032 0.32 -0.1
1,221,740 - Rru_A1032 0.32 -1.1
1,221,820 + Rru_A1032 0.38 -3.2
1,221,820 + Rru_A1032 0.38 +1.7
1,221,820 + Rru_A1032 0.38 -2.3
1,221,820 + Rru_A1032 0.38 -0.9
1,221,821 - Rru_A1032 0.38 +0.1
1,221,821 - Rru_A1032 0.38 -1.9
1,221,821 - Rru_A1032 0.38 -2.3
1,221,821 - Rru_A1032 0.38 +0.1

Or see this region's nucleotide sequence