Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0877

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0875 and Rru_A0876 are separated by 61 nucleotidesRru_A0876 and Rru_A0877 are separated by 552 nucleotidesRru_A0877 and Rru_A0878 are separated by 190 nucleotides Rru_A0875: Rru_A0875 - hypothetical protein (NCBI), at 1,045,571 to 1,045,894 _A0875 Rru_A0876: Rru_A0876 - hypothetical protein (NCBI), at 1,045,956 to 1,046,273 _A0876 Rru_A0877: Rru_A0877 - hypothetical protein (NCBI), at 1,046,826 to 1,047,863 _A0877 Rru_A0878: Rru_A0878 - ABC transporter component (NCBI), at 1,048,054 to 1,049,676 _A0878 Position (kb) 1046 1047 1048Strain fitness (log2 ratio) -3 -2 -1 0 1at 1046.013 kb on - strand, within Rru_A0876at 1046.280 kb on + strandat 1046.390 kb on + strandat 1046.651 kb on + strandat 1046.651 kb on + strandat 1046.651 kb on + strandat 1046.652 kb on - strandat 1046.652 kb on - strandat 1046.652 kb on - strandat 1046.652 kb on - strandat 1046.827 kb on + strandat 1046.827 kb on + strandat 1047.023 kb on - strand, within Rru_A0877at 1047.384 kb on + strand, within Rru_A0877at 1047.541 kb on + strand, within Rru_A0877at 1047.541 kb on + strand, within Rru_A0877at 1047.724 kb on + strand, within Rru_A0877at 1047.724 kb on + strand, within Rru_A0877at 1047.897 kb on - strandat 1047.927 kb on - strandat 1047.955 kb on + strandat 1048.018 kb on + strandat 1048.019 kb on - strandat 1048.019 kb on - strandat 1048.418 kb on - strand, within Rru_A0878at 1048.457 kb on - strand, within Rru_A0878at 1048.768 kb on + strand, within Rru_A0878at 1048.769 kb on - strand, within Rru_A0878at 1048.781 kb on - strand, within Rru_A0878at 1048.789 kb on + strand, within Rru_A0878

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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1,046,013 - Rru_A0876 0.18 -0.5
1,046,280 + +0.2
1,046,390 + -1.8
1,046,651 + +0.2
1,046,651 + +0.2
1,046,651 + +0.2
1,046,652 - +0.2
1,046,652 - +0.2
1,046,652 - -0.8
1,046,652 - -1.4
1,046,827 + -1.0
1,046,827 + -1.2
1,047,023 - Rru_A0877 0.19 -2.1
1,047,384 + Rru_A0877 0.54 -1.8
1,047,541 + Rru_A0877 0.69 -2.7
1,047,541 + Rru_A0877 0.69 -2.3
1,047,724 + Rru_A0877 0.87 -1.5
1,047,724 + Rru_A0877 0.87 -1.1
1,047,897 - +0.2
1,047,927 - -0.6
1,047,955 + -2.2
1,048,018 + -1.6
1,048,019 - -2.8
1,048,019 - +0.2
1,048,418 - Rru_A0878 0.22 +0.2
1,048,457 - Rru_A0878 0.25 -2.3
1,048,768 + Rru_A0878 0.44 -2.7
1,048,769 - Rru_A0878 0.44 +0.2
1,048,781 - Rru_A0878 0.45 +0.2
1,048,789 + Rru_A0878 0.45 -2.0

Or see this region's nucleotide sequence