Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0830

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0828 and Rru_A0829 are separated by 11 nucleotidesRru_A0829 and Rru_A0830 overlap by 4 nucleotidesRru_A0830 and Rru_A0831 overlap by 4 nucleotidesRru_A0831 and Rru_A0832 are separated by 20 nucleotides Rru_A0828: Rru_A0828 - CRISPR-associated helicase Cas3, core (NCBI), at 981,431 to 983,689 _A0828 Rru_A0829: Rru_A0829 - CRISPR-associated protein, CT1134 (NCBI), at 983,701 to 984,366 _A0829 Rru_A0830: Rru_A0830 - CRISPR-associated protein, CT1133 (NCBI), at 984,363 to 986,186 _A0830 Rru_A0831: Rru_A0831 - CRISPR-associated protein TM1801 (NCBI), at 986,183 to 987,136 _A0831 Rru_A0832: Rru_A0832 - Protein of unknown function DUF83 (NCBI), at 987,157 to 987,843 _A0832 Position (kb) 984 985 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 983.687 kb on + strandat 983.688 kb on - strandat 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.782 kb on + strand, within Rru_A0829at 983.783 kb on - strand, within Rru_A0829at 984.040 kb on + strand, within Rru_A0829at 984.040 kb on + strand, within Rru_A0829at 984.040 kb on + strand, within Rru_A0829at 984.041 kb on - strand, within Rru_A0829at 984.041 kb on - strand, within Rru_A0829at 984.090 kb on + strand, within Rru_A0829at 984.090 kb on + strand, within Rru_A0829at 984.112 kb on - strand, within Rru_A0829at 984.112 kb on - strand, within Rru_A0829at 984.393 kb on + strandat 984.393 kb on + strandat 984.394 kb on - strandat 984.449 kb on + strandat 984.450 kb on - strandat 984.451 kb on + strandat 984.535 kb on + strandat 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.615 kb on + strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.616 kb on - strand, within Rru_A0830at 984.846 kb on + strand, within Rru_A0830at 984.846 kb on + strand, within Rru_A0830at 984.846 kb on + strand, within Rru_A0830at 984.858 kb on - strand, within Rru_A0830at 984.979 kb on + strand, within Rru_A0830at 985.003 kb on + strand, within Rru_A0830at 985.017 kb on + strand, within Rru_A0830at 985.017 kb on + strand, within Rru_A0830at 985.017 kb on + strand, within Rru_A0830at 985.018 kb on - strand, within Rru_A0830at 985.042 kb on - strand, within Rru_A0830at 985.097 kb on + strand, within Rru_A0830at 985.130 kb on + strand, within Rru_A0830at 985.131 kb on - strand, within Rru_A0830at 985.295 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.350 kb on + strand, within Rru_A0830at 985.351 kb on - strand, within Rru_A0830at 985.351 kb on - strand, within Rru_A0830at 985.351 kb on - strand, within Rru_A0830at 985.435 kb on - strand, within Rru_A0830at 985.444 kb on - strand, within Rru_A0830at 985.444 kb on - strand, within Rru_A0830at 985.486 kb on - strand, within Rru_A0830at 985.566 kb on + strand, within Rru_A0830at 985.566 kb on + strand, within Rru_A0830at 985.566 kb on + strand, within Rru_A0830at 985.567 kb on - strand, within Rru_A0830at 985.567 kb on - strand, within Rru_A0830at 985.577 kb on + strand, within Rru_A0830at 985.578 kb on - strand, within Rru_A0830at 985.643 kb on + strand, within Rru_A0830at 985.644 kb on - strand, within Rru_A0830at 985.644 kb on - strand, within Rru_A0830at 985.644 kb on - strand, within Rru_A0830at 985.739 kb on + strand, within Rru_A0830at 985.753 kb on - strand, within Rru_A0830at 985.753 kb on - strand, within Rru_A0830at 985.753 kb on - strand, within Rru_A0830at 985.809 kb on + strand, within Rru_A0830at 985.842 kb on + strand, within Rru_A0830at 986.053 kb on - strandat 986.269 kb on + strandat 986.269 kb on + strandat 986.342 kb on + strand, within Rru_A0831at 986.342 kb on + strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.343 kb on - strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.380 kb on + strand, within Rru_A0831at 986.381 kb on - strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.384 kb on + strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.385 kb on - strand, within Rru_A0831at 986.769 kb on - strand, within Rru_A0831at 986.969 kb on - strand, within Rru_A0831at 986.969 kb on - strand, within Rru_A0831

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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983,687 + +0.2
983,688 - +1.2
983,782 + Rru_A0829 0.12 -0.8
983,782 + Rru_A0829 0.12 -0.8
983,782 + Rru_A0829 0.12 -2.2
983,782 + Rru_A0829 0.12 +0.2
983,782 + Rru_A0829 0.12 +0.9
983,783 - Rru_A0829 0.12 +0.2
984,040 + Rru_A0829 0.51 +0.2
984,040 + Rru_A0829 0.51 -0.2
984,040 + Rru_A0829 0.51 -0.8
984,041 - Rru_A0829 0.51 +0.2
984,041 - Rru_A0829 0.51 -2.6
984,090 + Rru_A0829 0.58 +0.2
984,090 + Rru_A0829 0.58 -1.9
984,112 - Rru_A0829 0.62 -0.8
984,112 - Rru_A0829 0.62 -1.8
984,393 + -1.7
984,393 + +0.2
984,394 - +0.2
984,449 + -0.8
984,450 - -0.4
984,451 + -1.9
984,535 + -2.0
984,615 + Rru_A0830 0.14 -1.4
984,615 + Rru_A0830 0.14 -0.8
984,615 + Rru_A0830 0.14 +0.2
984,615 + Rru_A0830 0.14 -1.5
984,615 + Rru_A0830 0.14 +0.2
984,615 + Rru_A0830 0.14 -0.8
984,615 + Rru_A0830 0.14 -1.4
984,615 + Rru_A0830 0.14 +0.2
984,615 + Rru_A0830 0.14 +0.2
984,616 - Rru_A0830 0.14 -1.5
984,616 - Rru_A0830 0.14 +1.8
984,616 - Rru_A0830 0.14 +0.2
984,616 - Rru_A0830 0.14 +0.2
984,616 - Rru_A0830 0.14 +0.2
984,846 + Rru_A0830 0.26 -2.0
984,846 + Rru_A0830 0.26 +0.2
984,846 + Rru_A0830 0.26 -0.8
984,858 - Rru_A0830 0.27 -3.1
984,979 + Rru_A0830 0.34 -2.6
985,003 + Rru_A0830 0.35 -1.9
985,017 + Rru_A0830 0.36 +0.2
985,017 + Rru_A0830 0.36 -1.4
985,017 + Rru_A0830 0.36 -2.0
985,018 - Rru_A0830 0.36 +0.2
985,042 - Rru_A0830 0.37 +0.2
985,097 + Rru_A0830 0.40 -0.8
985,130 + Rru_A0830 0.42 -1.5
985,131 - Rru_A0830 0.42 +0.2
985,295 + Rru_A0830 0.51 -1.8
985,350 + Rru_A0830 0.54 +0.2
985,350 + Rru_A0830 0.54 +1.8
985,350 + Rru_A0830 0.54 +0.2
985,350 + Rru_A0830 0.54 -1.4
985,351 - Rru_A0830 0.54 -0.8
985,351 - Rru_A0830 0.54 -2.0
985,351 - Rru_A0830 0.54 +0.2
985,435 - Rru_A0830 0.59 -0.8
985,444 - Rru_A0830 0.59 +0.2
985,444 - Rru_A0830 0.59 -2.9
985,486 - Rru_A0830 0.62 +0.2
985,566 + Rru_A0830 0.66 +0.2
985,566 + Rru_A0830 0.66 +0.2
985,566 + Rru_A0830 0.66 -2.0
985,567 - Rru_A0830 0.66 +0.2
985,567 - Rru_A0830 0.66 +0.2
985,577 + Rru_A0830 0.67 -1.4
985,578 - Rru_A0830 0.67 -1.4
985,643 + Rru_A0830 0.70 +1.3
985,644 - Rru_A0830 0.70 -1.7
985,644 - Rru_A0830 0.70 -2.9
985,644 - Rru_A0830 0.70 -1.4
985,739 + Rru_A0830 0.75 +0.2
985,753 - Rru_A0830 0.76 -0.8
985,753 - Rru_A0830 0.76 -1.4
985,753 - Rru_A0830 0.76 +0.2
985,809 + Rru_A0830 0.79 +0.2
985,842 + Rru_A0830 0.81 -1.2
986,053 - -0.2
986,269 + -1.4
986,269 + -1.4
986,342 + Rru_A0831 0.17 +0.2
986,342 + Rru_A0831 0.17 +0.2
986,343 - Rru_A0831 0.17 -0.8
986,343 - Rru_A0831 0.17 +0.2
986,343 - Rru_A0831 0.17 +0.2
986,343 - Rru_A0831 0.17 -1.9
986,343 - Rru_A0831 0.17 +0.2
986,343 - Rru_A0831 0.17 -0.8
986,343 - Rru_A0831 0.17 -1.4
986,343 - Rru_A0831 0.17 -0.5
986,380 + Rru_A0831 0.21 -2.4
986,380 + Rru_A0831 0.21 +0.2
986,380 + Rru_A0831 0.21 -1.8
986,380 + Rru_A0831 0.21 +0.2
986,380 + Rru_A0831 0.21 -2.4
986,381 - Rru_A0831 0.21 -1.6
986,384 + Rru_A0831 0.21 -1.8
986,384 + Rru_A0831 0.21 -0.5
986,384 + Rru_A0831 0.21 +0.2
986,384 + Rru_A0831 0.21 +0.2
986,384 + Rru_A0831 0.21 +0.0
986,384 + Rru_A0831 0.21 -1.8
986,385 - Rru_A0831 0.21 +0.2
986,385 - Rru_A0831 0.21 -1.3
986,385 - Rru_A0831 0.21 -3.2
986,385 - Rru_A0831 0.21 +0.2
986,385 - Rru_A0831 0.21 -1.0
986,385 - Rru_A0831 0.21 +0.2
986,385 - Rru_A0831 0.21 -0.8
986,769 - Rru_A0831 0.61 -1.4
986,969 - Rru_A0831 0.82 -1.4
986,969 - Rru_A0831 0.82 -1.8

Or see this region's nucleotide sequence