Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0803

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0801 and Rru_A0802 are separated by 6 nucleotidesRru_A0802 and Rru_A0803 overlap by 1 nucleotidesRru_A0803 and Rru_A0804 are separated by 411 nucleotides Rru_A0801: Rru_A0801 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 956,429 to 957,319 _A0801 Rru_A0802: Rru_A0802 - ABC transporter component (NCBI), at 957,326 to 958,156 _A0802 Rru_A0803: Rru_A0803 - ABC transporter component (NCBI), at 958,156 to 958,914 _A0803 Rru_A0804: Rru_A0804 - Transcriptional Regulator, LysR family (NCBI), at 959,326 to 960,291 _A0804 Position (kb) 958 959Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 957.331 kb on + strandat 957.331 kb on + strandat 957.331 kb on + strandat 957.331 kb on + strandat 957.332 kb on - strandat 957.332 kb on - strandat 957.332 kb on - strandat 957.499 kb on + strand, within Rru_A0802at 957.500 kb on - strand, within Rru_A0802at 957.681 kb on - strand, within Rru_A0802at 957.773 kb on + strand, within Rru_A0802at 957.773 kb on + strand, within Rru_A0802at 957.773 kb on + strand, within Rru_A0802at 957.773 kb on + strand, within Rru_A0802at 957.774 kb on - strand, within Rru_A0802at 957.774 kb on - strand, within Rru_A0802at 958.076 kb on + strandat 958.076 kb on + strandat 958.076 kb on + strandat 958.076 kb on + strandat 958.076 kb on + strandat 958.077 kb on - strandat 958.077 kb on - strandat 958.173 kb on - strandat 958.173 kb on - strandat 958.173 kb on - strandat 958.173 kb on - strandat 958.429 kb on + strand, within Rru_A0803at 958.429 kb on + strand, within Rru_A0803at 958.430 kb on - strand, within Rru_A0803at 958.430 kb on - strand, within Rru_A0803at 958.502 kb on - strand, within Rru_A0803at 958.761 kb on - strand, within Rru_A0803at 958.912 kb on + strandat 958.912 kb on + strandat 958.912 kb on + strandat 958.913 kb on - strandat 958.920 kb on + strandat 958.921 kb on - strandat 959.014 kb on + strandat 959.015 kb on - strandat 959.015 kb on - strandat 959.015 kb on - strandat 959.328 kb on - strandat 959.498 kb on - strand, within Rru_A0804at 959.500 kb on + strand, within Rru_A0804at 959.500 kb on + strand, within Rru_A0804at 959.500 kb on + strand, within Rru_A0804at 959.500 kb on + strand, within Rru_A0804at 959.501 kb on - strand, within Rru_A0804at 959.603 kb on - strand, within Rru_A0804at 959.603 kb on - strand, within Rru_A0804at 959.751 kb on - strand, within Rru_A0804at 959.751 kb on - strand, within Rru_A0804

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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957,331 + -2.6
957,331 + +0.7
957,331 + -3.1
957,331 + +0.8
957,332 - -1.2
957,332 - -1.7
957,332 - -1.0
957,499 + Rru_A0802 0.21 -2.6
957,500 - Rru_A0802 0.21 -0.9
957,681 - Rru_A0802 0.43 +0.2
957,773 + Rru_A0802 0.54 -0.8
957,773 + Rru_A0802 0.54 -0.3
957,773 + Rru_A0802 0.54 +0.8
957,773 + Rru_A0802 0.54 +0.2
957,774 - Rru_A0802 0.54 +0.2
957,774 - Rru_A0802 0.54 -1.2
958,076 + +0.2
958,076 + +0.8
958,076 + -0.4
958,076 + +0.2
958,076 + -0.2
958,077 - -3.1
958,077 - +0.2
958,173 - +0.2
958,173 - -0.9
958,173 - +0.2
958,173 - -0.0
958,429 + Rru_A0803 0.36 -2.4
958,429 + Rru_A0803 0.36 -1.4
958,430 - Rru_A0803 0.36 -2.3
958,430 - Rru_A0803 0.36 -1.9
958,502 - Rru_A0803 0.46 -1.6
958,761 - Rru_A0803 0.80 +1.2
958,912 + -1.4
958,912 + +0.2
958,912 + -1.8
958,913 - +4.0
958,920 + +0.2
958,921 - -0.8
959,014 + +0.2
959,015 - +0.2
959,015 - +0.2
959,015 - +0.2
959,328 - -2.1
959,498 - Rru_A0804 0.18 -1.8
959,500 + Rru_A0804 0.18 -0.8
959,500 + Rru_A0804 0.18 +0.2
959,500 + Rru_A0804 0.18 -0.8
959,500 + Rru_A0804 0.18 +0.2
959,501 - Rru_A0804 0.18 -0.8
959,603 - Rru_A0804 0.29 -3.1
959,603 - Rru_A0804 0.29 -0.6
959,751 - Rru_A0804 0.44 -2.1
959,751 - Rru_A0804 0.44 -2.1

Or see this region's nucleotide sequence