Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0788

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0787 and Rru_A0788 are separated by 149 nucleotidesRru_A0788 and Rru_A0789 overlap by 32 nucleotidesRru_A0789 and Rru_A0790 are separated by 26 nucleotides Rru_A0787: Rru_A0787 - cysteine synthase (NCBI), at 939,595 to 940,959 _A0787 Rru_A0788: Rru_A0788 - ABC transporter component (NCBI), at 941,109 to 942,164 _A0788 Rru_A0789: Rru_A0789 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 942,133 to 942,810 _A0789 Rru_A0790: Rru_A0790 - Phenylacetate--CoA ligase (NCBI), at 942,837 to 944,213 _A0790 Position (kb) 941 942 943Strain fitness (log2 ratio) -3 -2 -1 0 1at 940.109 kb on + strand, within Rru_A0787at 940.215 kb on + strand, within Rru_A0787at 940.215 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.217 kb on + strand, within Rru_A0787at 940.218 kb on - strand, within Rru_A0787at 940.218 kb on - strand, within Rru_A0787at 940.218 kb on - strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.322 kb on + strand, within Rru_A0787at 940.323 kb on - strand, within Rru_A0787at 940.581 kb on - strand, within Rru_A0787at 940.583 kb on + strand, within Rru_A0787at 940.583 kb on + strand, within Rru_A0787at 940.583 kb on + strand, within Rru_A0787at 941.025 kb on + strandat 941.025 kb on + strandat 941.025 kb on + strandat 941.025 kb on + strandat 941.025 kb on + strandat 941.031 kb on + strandat 941.517 kb on + strand, within Rru_A0788at 942.015 kb on + strand, within Rru_A0788at 942.016 kb on - strand, within Rru_A0788at 942.093 kb on + strandat 942.673 kb on + strand, within Rru_A0789at 942.808 kb on + strandat 942.809 kb on - strandat 942.901 kb on - strandat 942.981 kb on + strand, within Rru_A0790at 942.981 kb on + strand, within Rru_A0790

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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940,109 + Rru_A0787 0.38 +0.2
940,215 + Rru_A0787 0.45 -2.2
940,215 + Rru_A0787 0.45 -1.8
940,217 + Rru_A0787 0.46 -1.5
940,217 + Rru_A0787 0.46 -0.9
940,217 + Rru_A0787 0.46 -0.8
940,217 + Rru_A0787 0.46 -1.1
940,217 + Rru_A0787 0.46 -2.2
940,217 + Rru_A0787 0.46 +0.2
940,218 - Rru_A0787 0.46 -2.9
940,218 - Rru_A0787 0.46 -2.0
940,218 - Rru_A0787 0.46 -0.2
940,322 + Rru_A0787 0.53 +0.2
940,322 + Rru_A0787 0.53 +0.2
940,322 + Rru_A0787 0.53 +0.2
940,322 + Rru_A0787 0.53 +0.2
940,322 + Rru_A0787 0.53 -2.1
940,323 - Rru_A0787 0.53 +0.2
940,581 - Rru_A0787 0.72 -0.5
940,583 + Rru_A0787 0.72 +0.2
940,583 + Rru_A0787 0.72 -2.4
940,583 + Rru_A0787 0.72 +0.2
941,025 + -0.4
941,025 + -1.7
941,025 + -2.8
941,025 + -3.3
941,025 + -1.1
941,031 + -2.3
941,517 + Rru_A0788 0.39 -2.8
942,015 + Rru_A0788 0.86 +0.2
942,016 - Rru_A0788 0.86 -1.7
942,093 + +0.2
942,673 + Rru_A0789 0.80 +0.2
942,808 + +0.2
942,809 - +0.2
942,901 - +0.2
942,981 + Rru_A0790 0.10 -1.6
942,981 + Rru_A0790 0.10 -3.2

Or see this region's nucleotide sequence