Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0786 and Rru_A0787 overlap by 4 nucleotides Rru_A0787 and Rru_A0788 are separated by 149 nucleotides
Rru_A0786: Rru_A0786 - Cystathionine gamma-synthase (NCBI), at 938,426 to 939,598
_A0786
Rru_A0787: Rru_A0787 - cysteine synthase (NCBI), at 939,595 to 940,959
_A0787
Rru_A0788: Rru_A0788 - ABC transporter component (NCBI), at 941,109 to 942,164
_A0788
Position (kb) 939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 938.748 kb on + strand, within Rru_A0786 at 938.982 kb on + strand, within Rru_A0786 at 938.982 kb on + strand, within Rru_A0786 at 938.983 kb on - strand, within Rru_A0786 at 938.983 kb on - strand, within Rru_A0786 at 938.983 kb on - strand, within Rru_A0786 at 938.983 kb on - strand, within Rru_A0786 at 939.216 kb on + strand, within Rru_A0786 at 939.216 kb on + strand, within Rru_A0786 at 939.216 kb on + strand, within Rru_A0786 at 939.216 kb on + strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.217 kb on - strand, within Rru_A0786 at 939.279 kb on + strand, within Rru_A0786 at 939.279 kb on + strand, within Rru_A0786 at 939.280 kb on - strand, within Rru_A0786 at 939.301 kb on + strand, within Rru_A0786 at 939.302 kb on - strand, within Rru_A0786 at 939.302 kb on - strand, within Rru_A0786 at 939.302 kb on - strand, within Rru_A0786 at 939.367 kb on - strand, within Rru_A0786 at 939.441 kb on + strand, within Rru_A0786 at 939.442 kb on - strand, within Rru_A0786 at 939.442 kb on - strand, within Rru_A0786 at 939.454 kb on + strand, within Rru_A0786 at 939.454 kb on + strand, within Rru_A0786 at 939.454 kb on + strand, within Rru_A0786 at 939.454 kb on + strand, within Rru_A0786 at 939.495 kb on + strand at 939.495 kb on + strand at 939.495 kb on + strand at 939.496 kb on - strand at 939.496 kb on - strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.614 kb on - strand at 939.614 kb on - strand at 940.029 kb on + strand, within Rru_A0787 at 940.032 kb on - strand, within Rru_A0787 at 940.032 kb on - strand, within Rru_A0787 at 940.043 kb on - strand, within Rru_A0787 at 940.047 kb on - strand, within Rru_A0787 at 940.047 kb on - strand, within Rru_A0787 at 940.050 kb on + strand, within Rru_A0787 at 940.050 kb on + strand, within Rru_A0787 at 940.050 kb on + strand, within Rru_A0787 at 940.050 kb on + strand, within Rru_A0787 at 940.051 kb on - strand, within Rru_A0787 at 940.109 kb on + strand, within Rru_A0787 at 940.215 kb on + strand, within Rru_A0787 at 940.215 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.217 kb on + strand, within Rru_A0787 at 940.218 kb on - strand, within Rru_A0787 at 940.218 kb on - strand, within Rru_A0787 at 940.218 kb on - strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.322 kb on + strand, within Rru_A0787 at 940.323 kb on - strand, within Rru_A0787 at 940.581 kb on - strand, within Rru_A0787 at 940.583 kb on + strand, within Rru_A0787 at 940.583 kb on + strand, within Rru_A0787 at 940.583 kb on + strand, within Rru_A0787 at 941.025 kb on + strand at 941.025 kb on + strand at 941.025 kb on + strand at 941.025 kb on + strand at 941.025 kb on + strand at 941.031 kb on + strand at 941.517 kb on + strand, within Rru_A0788
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 938,748 + Rru_A0786 0.27 -1.3 938,982 + Rru_A0786 0.47 +0.3 938,982 + Rru_A0786 0.47 -0.1 938,983 - Rru_A0786 0.47 +0.2 938,983 - Rru_A0786 0.47 -1.6 938,983 - Rru_A0786 0.47 -2.0 938,983 - Rru_A0786 0.47 +0.2 939,216 + Rru_A0786 0.67 +0.2 939,216 + Rru_A0786 0.67 +0.2 939,216 + Rru_A0786 0.67 -3.1 939,216 + Rru_A0786 0.67 +0.2 939,217 - Rru_A0786 0.67 -1.6 939,217 - Rru_A0786 0.67 +0.2 939,217 - Rru_A0786 0.67 -1.5 939,217 - Rru_A0786 0.67 -1.1 939,217 - Rru_A0786 0.67 -1.2 939,217 - Rru_A0786 0.67 -1.4 939,217 - Rru_A0786 0.67 -2.3 939,217 - Rru_A0786 0.67 +0.2 939,279 + Rru_A0786 0.73 +0.2 939,279 + Rru_A0786 0.73 -1.6 939,280 - Rru_A0786 0.73 +0.2 939,301 + Rru_A0786 0.75 -0.8 939,302 - Rru_A0786 0.75 -0.0 939,302 - Rru_A0786 0.75 -0.5 939,302 - Rru_A0786 0.75 +0.2 939,367 - Rru_A0786 0.80 -0.8 939,441 + Rru_A0786 0.87 +1.2 939,442 - Rru_A0786 0.87 -0.4 939,442 - Rru_A0786 0.87 -1.6 939,454 + Rru_A0786 0.88 -0.8 939,454 + Rru_A0786 0.88 -0.4 939,454 + Rru_A0786 0.88 +0.2 939,454 + Rru_A0786 0.88 -2.2 939,495 + -2.5 939,495 + -1.7 939,495 + +0.2 939,496 - +0.2 939,496 - -0.4 939,614 - -0.5 939,614 - -0.1 939,614 - -1.5 939,614 - +0.2 940,029 + Rru_A0787 0.32 -1.8 940,032 - Rru_A0787 0.32 -1.7 940,032 - Rru_A0787 0.32 -2.8 940,043 - Rru_A0787 0.33 +0.2 940,047 - Rru_A0787 0.33 +0.2 940,047 - Rru_A0787 0.33 -0.9 940,050 + Rru_A0787 0.33 -1.4 940,050 + Rru_A0787 0.33 +2.4 940,050 + Rru_A0787 0.33 -1.4 940,050 + Rru_A0787 0.33 -0.0 940,051 - Rru_A0787 0.33 -1.7 940,109 + Rru_A0787 0.38 +0.2 940,215 + Rru_A0787 0.45 -2.2 940,215 + Rru_A0787 0.45 -1.8 940,217 + Rru_A0787 0.46 -1.5 940,217 + Rru_A0787 0.46 -0.9 940,217 + Rru_A0787 0.46 -0.8 940,217 + Rru_A0787 0.46 -1.1 940,217 + Rru_A0787 0.46 -2.2 940,217 + Rru_A0787 0.46 +0.2 940,218 - Rru_A0787 0.46 -2.9 940,218 - Rru_A0787 0.46 -2.0 940,218 - Rru_A0787 0.46 -0.2 940,322 + Rru_A0787 0.53 +0.2 940,322 + Rru_A0787 0.53 +0.2 940,322 + Rru_A0787 0.53 +0.2 940,322 + Rru_A0787 0.53 +0.2 940,322 + Rru_A0787 0.53 -2.1 940,323 - Rru_A0787 0.53 +0.2 940,581 - Rru_A0787 0.72 -0.5 940,583 + Rru_A0787 0.72 +0.2 940,583 + Rru_A0787 0.72 -2.4 940,583 + Rru_A0787 0.72 +0.2 941,025 + -0.4 941,025 + -1.7 941,025 + -2.8 941,025 + -3.3 941,025 + -1.1 941,031 + -2.3 941,517 + Rru_A0788 0.39 -2.8
Or see this region's nucleotide sequence