Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0621

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0619 and Rru_A0620 overlap by 1 nucleotidesRru_A0620 and Rru_A0621 are separated by 34 nucleotidesRru_A0621 and Rru_A0622 overlap by 26 nucleotides Rru_A0619: Rru_A0619 - Magnesium protoporphyrin O-methyltransferase (NCBI), at 733,474 to 734,184 _A0619 Rru_A0620: Rru_A0620 - Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI), at 734,184 to 735,071 _A0620 Rru_A0621: Rru_A0621 - Magnesium-chelatase, subunit H (NCBI), at 735,106 to 738,834 _A0621 Rru_A0622: Rru_A0622 - Light-independent protochlorophyllide reductase, B subunit (NCBI), at 738,809 to 740,449 _A0622 Position (kb) 735 736 737 738 739Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 734.139 kb on - strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.168 kb on + strandat 734.169 kb on - strandat 734.169 kb on - strandat 734.220 kb on + strandat 734.221 kb on - strandat 734.221 kb on - strandat 734.281 kb on + strand, within Rru_A0620at 734.282 kb on - strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.476 kb on + strand, within Rru_A0620at 734.692 kb on + strand, within Rru_A0620at 734.692 kb on + strand, within Rru_A0620at 734.752 kb on + strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.753 kb on - strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.968 kb on + strand, within Rru_A0620at 734.969 kb on - strand, within Rru_A0620at 735.074 kb on + strandat 735.075 kb on - strandat 735.075 kb on - strandat 735.075 kb on - strandat 735.078 kb on + strandat 735.078 kb on + strandat 735.078 kb on + strandat 735.079 kb on - strandat 735.127 kb on + strandat 735.127 kb on + strandat 735.203 kb on + strandat 735.203 kb on + strandat 735.203 kb on + strandat 735.203 kb on + strandat 735.321 kb on + strandat 735.322 kb on - strandat 735.322 kb on - strandat 735.323 kb on + strandat 735.407 kb on + strandat 735.408 kb on - strandat 735.431 kb on + strandat 735.527 kb on + strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.528 kb on - strand, within Rru_A0621at 735.593 kb on + strand, within Rru_A0621at 735.713 kb on + strand, within Rru_A0621at 735.806 kb on + strand, within Rru_A0621at 735.807 kb on - strand, within Rru_A0621at 735.873 kb on + strand, within Rru_A0621at 735.873 kb on + strand, within Rru_A0621at 735.874 kb on - strand, within Rru_A0621at 735.874 kb on - strand, within Rru_A0621at 735.874 kb on - strand, within Rru_A0621at 735.875 kb on + strand, within Rru_A0621at 735.876 kb on - strand, within Rru_A0621at 735.876 kb on - strand, within Rru_A0621at 735.876 kb on - strand, within Rru_A0621at 735.899 kb on + strand, within Rru_A0621at 735.899 kb on + strand, within Rru_A0621at 735.900 kb on - strand, within Rru_A0621at 735.900 kb on - strand, within Rru_A0621at 736.073 kb on + strand, within Rru_A0621at 736.395 kb on + strand, within Rru_A0621at 736.640 kb on + strand, within Rru_A0621at 736.640 kb on + strand, within Rru_A0621at 736.640 kb on + strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.641 kb on - strand, within Rru_A0621at 736.874 kb on + strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.875 kb on - strand, within Rru_A0621at 736.940 kb on + strand, within Rru_A0621at 736.940 kb on + strand, within Rru_A0621at 736.940 kb on + strand, within Rru_A0621at 736.946 kb on + strand, within Rru_A0621at 736.946 kb on + strand, within Rru_A0621at 736.946 kb on + strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 736.947 kb on - strand, within Rru_A0621at 737.090 kb on + strand, within Rru_A0621at 737.090 kb on + strand, within Rru_A0621at 737.090 kb on + strand, within Rru_A0621at 737.417 kb on + strand, within Rru_A0621at 737.462 kb on + strand, within Rru_A0621at 737.462 kb on + strand, within Rru_A0621at 737.463 kb on - strand, within Rru_A0621at 737.474 kb on + strand, within Rru_A0621at 737.474 kb on + strand, within Rru_A0621at 737.474 kb on + strand, within Rru_A0621at 737.860 kb on - strand, within Rru_A0621at 737.861 kb on + strand, within Rru_A0621at 737.861 kb on + strand, within Rru_A0621at 737.861 kb on + strand, within Rru_A0621at 737.862 kb on - strand, within Rru_A0621at 737.862 kb on - strand, within Rru_A0621at 737.939 kb on + strand, within Rru_A0621at 737.939 kb on + strand, within Rru_A0621at 737.939 kb on + strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 737.940 kb on - strand, within Rru_A0621at 738.033 kb on - strand, within Rru_A0621at 738.057 kb on + strand, within Rru_A0621at 738.057 kb on + strand, within Rru_A0621at 738.058 kb on - strand, within Rru_A0621at 738.058 kb on - strand, within Rru_A0621at 738.059 kb on + strand, within Rru_A0621at 738.059 kb on + strand, within Rru_A0621at 738.162 kb on - strand, within Rru_A0621at 738.162 kb on - strand, within Rru_A0621at 738.162 kb on - strand, within Rru_A0621at 738.265 kb on - strand, within Rru_A0621at 738.265 kb on - strand, within Rru_A0621at 738.317 kb on + strand, within Rru_A0621at 738.318 kb on - strand, within Rru_A0621at 738.591 kb on + strandat 738.591 kb on + strandat 738.591 kb on + strandat 738.591 kb on + strandat 738.592 kb on - strandat 738.713 kb on - strandat 738.837 kb on + strandat 738.837 kb on + strandat 738.838 kb on - strandat 739.328 kb on - strand, within Rru_A0622at 739.398 kb on + strand, within Rru_A0622at 739.398 kb on + strand, within Rru_A0622at 739.399 kb on - strand, within Rru_A0622at 739.462 kb on - strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.473 kb on + strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.474 kb on - strand, within Rru_A0622at 739.581 kb on + strand, within Rru_A0622

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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734,139 - -1.5
734,168 + +0.1
734,168 + +0.1
734,168 + +0.1
734,168 + -2.1
734,169 - +0.1
734,169 - +0.1
734,220 + +0.1
734,221 - +0.1
734,221 - -1.9
734,281 + Rru_A0620 0.11 -3.4
734,282 - Rru_A0620 0.11 -1.7
734,476 + Rru_A0620 0.33 -3.6
734,476 + Rru_A0620 0.33 +0.1
734,476 + Rru_A0620 0.33 +0.1
734,476 + Rru_A0620 0.33 -0.9
734,692 + Rru_A0620 0.57 -1.9
734,692 + Rru_A0620 0.57 +0.1
734,752 + Rru_A0620 0.64 +1.7
734,753 - Rru_A0620 0.64 -2.2
734,753 - Rru_A0620 0.64 +0.1
734,753 - Rru_A0620 0.64 -1.9
734,753 - Rru_A0620 0.64 +0.1
734,968 + Rru_A0620 0.88 +0.1
734,968 + Rru_A0620 0.88 -0.6
734,968 + Rru_A0620 0.88 +0.1
734,968 + Rru_A0620 0.88 +0.1
734,969 - Rru_A0620 0.88 +0.1
735,074 + -1.9
735,075 - +0.1
735,075 - +0.1
735,075 - +0.1
735,078 + -2.5
735,078 + +0.1
735,078 + +0.1
735,079 - -3.7
735,127 + -1.9
735,127 + -0.9
735,203 + +0.1
735,203 + -0.9
735,203 + -2.3
735,203 + -2.2
735,321 + -0.9
735,322 - +0.1
735,322 - -0.9
735,323 + +0.1
735,407 + +0.1
735,408 - +0.1
735,431 + -2.2
735,527 + Rru_A0621 0.11 +0.1
735,528 - Rru_A0621 0.11 -2.2
735,528 - Rru_A0621 0.11 +0.1
735,528 - Rru_A0621 0.11 +0.1
735,528 - Rru_A0621 0.11 +0.1
735,528 - Rru_A0621 0.11 +0.1
735,593 + Rru_A0621 0.13 -1.2
735,713 + Rru_A0621 0.16 -2.8
735,806 + Rru_A0621 0.19 +0.1
735,807 - Rru_A0621 0.19 +0.1
735,873 + Rru_A0621 0.21 -3.8
735,873 + Rru_A0621 0.21 -0.9
735,874 - Rru_A0621 0.21 -1.2
735,874 - Rru_A0621 0.21 +0.1
735,874 - Rru_A0621 0.21 -2.2
735,875 + Rru_A0621 0.21 +0.1
735,876 - Rru_A0621 0.21 -3.4
735,876 - Rru_A0621 0.21 +0.1
735,876 - Rru_A0621 0.21 -2.8
735,899 + Rru_A0621 0.21 +0.1
735,899 + Rru_A0621 0.21 -3.0
735,900 - Rru_A0621 0.21 -2.2
735,900 - Rru_A0621 0.21 -1.5
736,073 + Rru_A0621 0.26 -3.4
736,395 + Rru_A0621 0.35 -1.5
736,640 + Rru_A0621 0.41 +0.1
736,640 + Rru_A0621 0.41 -2.7
736,640 + Rru_A0621 0.41 -2.2
736,641 - Rru_A0621 0.41 +0.1
736,641 - Rru_A0621 0.41 -0.9
736,641 - Rru_A0621 0.41 +0.1
736,641 - Rru_A0621 0.41 +1.1
736,641 - Rru_A0621 0.41 -2.5
736,874 + Rru_A0621 0.47 +0.1
736,875 - Rru_A0621 0.47 -1.7
736,875 - Rru_A0621 0.47 +0.1
736,875 - Rru_A0621 0.47 -3.1
736,875 - Rru_A0621 0.47 -1.5
736,875 - Rru_A0621 0.47 -1.5
736,940 + Rru_A0621 0.49 -0.9
736,940 + Rru_A0621 0.49 +0.1
736,940 + Rru_A0621 0.49 -3.4
736,946 + Rru_A0621 0.49 -3.2
736,946 + Rru_A0621 0.49 +0.1
736,946 + Rru_A0621 0.49 -2.5
736,947 - Rru_A0621 0.49 +0.1
736,947 - Rru_A0621 0.49 +0.1
736,947 - Rru_A0621 0.49 -0.9
736,947 - Rru_A0621 0.49 -1.5
736,947 - Rru_A0621 0.49 -1.9
736,947 - Rru_A0621 0.49 -0.4
736,947 - Rru_A0621 0.49 +0.1
737,090 + Rru_A0621 0.53 -2.9
737,090 + Rru_A0621 0.53 -1.5
737,090 + Rru_A0621 0.53 -3.6
737,417 + Rru_A0621 0.62 -1.2
737,462 + Rru_A0621 0.63 -2.7
737,462 + Rru_A0621 0.63 +0.1
737,463 - Rru_A0621 0.63 -0.9
737,474 + Rru_A0621 0.64 -0.9
737,474 + Rru_A0621 0.64 -2.6
737,474 + Rru_A0621 0.64 -3.1
737,860 - Rru_A0621 0.74 +0.1
737,861 + Rru_A0621 0.74 -0.9
737,861 + Rru_A0621 0.74 -0.9
737,861 + Rru_A0621 0.74 -1.5
737,862 - Rru_A0621 0.74 -0.9
737,862 - Rru_A0621 0.74 +0.1
737,939 + Rru_A0621 0.76 +0.1
737,939 + Rru_A0621 0.76 +0.1
737,939 + Rru_A0621 0.76 +0.1
737,940 - Rru_A0621 0.76 -2.2
737,940 - Rru_A0621 0.76 -0.9
737,940 - Rru_A0621 0.76 +0.1
737,940 - Rru_A0621 0.76 -3.1
737,940 - Rru_A0621 0.76 -2.3
738,033 - Rru_A0621 0.78 +0.1
738,057 + Rru_A0621 0.79 +0.1
738,057 + Rru_A0621 0.79 +0.1
738,058 - Rru_A0621 0.79 -0.9
738,058 - Rru_A0621 0.79 -2.1
738,059 + Rru_A0621 0.79 -2.5
738,059 + Rru_A0621 0.79 +0.1
738,162 - Rru_A0621 0.82 +0.1
738,162 - Rru_A0621 0.82 +0.1
738,162 - Rru_A0621 0.82 -0.9
738,265 - Rru_A0621 0.85 +0.1
738,265 - Rru_A0621 0.85 +0.1
738,317 + Rru_A0621 0.86 +0.1
738,318 - Rru_A0621 0.86 +0.1
738,591 + +0.1
738,591 + -1.5
738,591 + -0.9
738,591 + +0.1
738,592 - -2.5
738,713 - +0.1
738,837 + -2.1
738,837 + +1.7
738,838 - -2.2
739,328 - Rru_A0622 0.32 +0.1
739,398 + Rru_A0622 0.36 -3.1
739,398 + Rru_A0622 0.36 +1.1
739,399 - Rru_A0622 0.36 -2.3
739,462 - Rru_A0622 0.40 -2.2
739,473 + Rru_A0622 0.40 -2.2
739,473 + Rru_A0622 0.40 +0.1
739,473 + Rru_A0622 0.40 +0.1
739,473 + Rru_A0622 0.40 +0.1
739,473 + Rru_A0622 0.40 +0.1
739,473 + Rru_A0622 0.40 -1.4
739,473 + Rru_A0622 0.40 +0.1
739,473 + Rru_A0622 0.40 -1.2
739,474 - Rru_A0622 0.41 -2.5
739,474 - Rru_A0622 0.41 -2.6
739,474 - Rru_A0622 0.41 +0.1
739,474 - Rru_A0622 0.41 +0.1
739,474 - Rru_A0622 0.41 -2.5
739,581 + Rru_A0622 0.47 -0.2

Or see this region's nucleotide sequence