Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0559

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0558 and Rru_A0559 are separated by 84 nucleotidesRru_A0559 and Rru_A0560 are separated by 183 nucleotides Rru_A0558: Rru_A0558 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (NCBI), at 659,064 to 661,115 _A0558 Rru_A0559: Rru_A0559 - Alpha/beta hydrolase fold (NCBI), at 661,200 to 662,003 _A0559 Rru_A0560: Rru_A0560 - Cytochrome bd ubiquinol oxidase, subunit I (NCBI), at 662,187 to 663,617 _A0560 Position (kb) 661 662 663Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 660.550 kb on + strand, within Rru_A0558at 660.634 kb on + strand, within Rru_A0558at 660.680 kb on + strand, within Rru_A0558at 660.777 kb on - strand, within Rru_A0558at 660.798 kb on + strand, within Rru_A0558at 660.832 kb on - strand, within Rru_A0558at 660.975 kb on - strandat 661.020 kb on + strandat 661.021 kb on - strandat 661.154 kb on + strandat 661.165 kb on + strandat 661.166 kb on - strandat 661.430 kb on + strand, within Rru_A0559at 661.430 kb on + strand, within Rru_A0559at 661.430 kb on + strand, within Rru_A0559at 661.430 kb on + strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.431 kb on - strand, within Rru_A0559at 661.474 kb on + strand, within Rru_A0559at 661.475 kb on - strand, within Rru_A0559at 662.058 kb on + strandat 662.058 kb on + strandat 662.059 kb on - strandat 662.150 kb on + strandat 662.150 kb on + strandat 662.151 kb on - strandat 662.151 kb on - strandat 662.154 kb on + strandat 662.154 kb on + strandat 662.155 kb on - strandat 662.155 kb on - strandat 662.293 kb on - strandat 662.352 kb on + strand, within Rru_A0560at 662.352 kb on + strand, within Rru_A0560at 662.352 kb on + strand, within Rru_A0560at 662.353 kb on - strand, within Rru_A0560at 662.353 kb on - strand, within Rru_A0560at 662.353 kb on - strand, within Rru_A0560at 662.353 kb on - strand, within Rru_A0560at 662.354 kb on + strand, within Rru_A0560at 662.354 kb on + strand, within Rru_A0560at 662.354 kb on + strand, within Rru_A0560at 662.354 kb on + strand, within Rru_A0560at 662.421 kb on + strand, within Rru_A0560at 662.421 kb on + strand, within Rru_A0560at 662.422 kb on - strand, within Rru_A0560at 662.422 kb on - strand, within Rru_A0560at 662.422 kb on - strand, within Rru_A0560at 662.422 kb on - strand, within Rru_A0560at 662.490 kb on + strand, within Rru_A0560at 662.490 kb on + strand, within Rru_A0560at 662.490 kb on + strand, within Rru_A0560at 662.490 kb on + strand, within Rru_A0560at 662.491 kb on - strand, within Rru_A0560at 662.491 kb on - strand, within Rru_A0560at 662.654 kb on + strand, within Rru_A0560at 662.654 kb on + strand, within Rru_A0560at 662.655 kb on - strand, within Rru_A0560at 662.669 kb on + strand, within Rru_A0560at 662.750 kb on + strand, within Rru_A0560at 662.750 kb on + strand, within Rru_A0560at 662.766 kb on + strand, within Rru_A0560at 662.767 kb on - strand, within Rru_A0560

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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660,550 + Rru_A0558 0.72 +0.1
660,634 + Rru_A0558 0.77 +0.1
660,680 + Rru_A0558 0.79 +0.1
660,777 - Rru_A0558 0.83 +1.6
660,798 + Rru_A0558 0.85 -1.2
660,832 - Rru_A0558 0.86 -0.9
660,975 - -1.7
661,020 + +0.0
661,021 - +0.0
661,154 + -1.4
661,165 + +0.0
661,166 - -2.2
661,430 + Rru_A0559 0.29 +0.0
661,430 + Rru_A0559 0.29 -1.0
661,430 + Rru_A0559 0.29 +0.0
661,430 + Rru_A0559 0.29 -2.5
661,431 - Rru_A0559 0.29 +0.0
661,431 - Rru_A0559 0.29 -3.0
661,431 - Rru_A0559 0.29 -3.1
661,431 - Rru_A0559 0.29 -1.4
661,431 - Rru_A0559 0.29 -2.4
661,474 + Rru_A0559 0.34 -2.8
661,475 - Rru_A0559 0.34 +0.0
662,058 + +0.0
662,058 + +0.0
662,059 - -0.6
662,150 + +0.0
662,150 + +0.0
662,151 - +0.0
662,151 - -1.0
662,154 + -3.0
662,154 + -1.7
662,155 - +0.0
662,155 - +0.0
662,293 - +2.4
662,352 + Rru_A0560 0.12 +0.0
662,352 + Rru_A0560 0.12 +0.0
662,352 + Rru_A0560 0.12 -3.0
662,353 - Rru_A0560 0.12 -1.8
662,353 - Rru_A0560 0.12 +2.0
662,353 - Rru_A0560 0.12 +0.0
662,353 - Rru_A0560 0.12 +0.0
662,354 + Rru_A0560 0.12 +0.0
662,354 + Rru_A0560 0.12 -2.6
662,354 + Rru_A0560 0.12 -1.3
662,354 + Rru_A0560 0.12 -0.6
662,421 + Rru_A0560 0.16 -1.0
662,421 + Rru_A0560 0.16 +0.0
662,422 - Rru_A0560 0.16 +0.0
662,422 - Rru_A0560 0.16 +0.0
662,422 - Rru_A0560 0.16 -1.6
662,422 - Rru_A0560 0.16 -1.7
662,490 + Rru_A0560 0.21 +0.0
662,490 + Rru_A0560 0.21 +0.0
662,490 + Rru_A0560 0.21 -1.8
662,490 + Rru_A0560 0.21 -3.0
662,491 - Rru_A0560 0.21 -0.6
662,491 - Rru_A0560 0.21 +1.0
662,654 + Rru_A0560 0.33 +0.0
662,654 + Rru_A0560 0.33 -1.4
662,655 - Rru_A0560 0.33 +0.0
662,669 + Rru_A0560 0.34 +0.0
662,750 + Rru_A0560 0.39 +0.0
662,750 + Rru_A0560 0.39 +0.0
662,766 + Rru_A0560 0.40 -1.0
662,767 - Rru_A0560 0.41 +0.0

Or see this region's nucleotide sequence