Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0490 and Rru_A0491 overlap by 4 nucleotides Rru_A0491 and Rru_A0492 overlap by 26 nucleotides Rru_A0492 and Rru_A0493 are separated by 67 nucleotides
Rru_A0490: Rru_A0490 - transport system permease protein (NCBI), at 576,212 to 577,213
_A0490
Rru_A0491: Rru_A0491 - ABC transporter component (NCBI), at 577,210 to 578,013
_A0491
Rru_A0492: Rru_A0492 - hypothetical protein (NCBI), at 577,988 to 578,740
_A0492
Rru_A0493: Rru_A0493 - Phytoene desaturase (NCBI), at 578,808 to 580,331
_A0493
Position (kb) 577
578
579 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 577.210 kb on - strand at 577.210 kb on - strand at 577.210 kb on - strand at 577.210 kb on - strand at 577.447 kb on + strand, within Rru_A0491 at 577.447 kb on + strand, within Rru_A0491 at 577.447 kb on + strand, within Rru_A0491 at 577.447 kb on + strand, within Rru_A0491 at 577.448 kb on - strand, within Rru_A0491 at 577.448 kb on - strand, within Rru_A0491 at 577.448 kb on - strand, within Rru_A0491 at 577.448 kb on - strand, within Rru_A0491 at 577.824 kb on + strand, within Rru_A0491 at 577.824 kb on + strand, within Rru_A0491 at 577.825 kb on - strand, within Rru_A0491 at 577.825 kb on - strand, within Rru_A0491 at 577.912 kb on + strand, within Rru_A0491 at 577.912 kb on + strand, within Rru_A0491 at 577.989 kb on + strand at 577.989 kb on + strand at 577.990 kb on - strand at 578.047 kb on - strand at 578.080 kb on + strand, within Rru_A0492 at 578.095 kb on - strand, within Rru_A0492 at 578.284 kb on + strand, within Rru_A0492 at 578.284 kb on + strand, within Rru_A0492 at 578.284 kb on + strand, within Rru_A0492 at 578.285 kb on - strand, within Rru_A0492 at 578.285 kb on - strand, within Rru_A0492 at 578.285 kb on - strand, within Rru_A0492 at 578.764 kb on - strand at 578.764 kb on - strand at 578.777 kb on + strand at 578.778 kb on - strand at 578.796 kb on + strand at 579.111 kb on - strand, within Rru_A0493 at 579.239 kb on + strand, within Rru_A0493 at 579.239 kb on + strand, within Rru_A0493 at 579.239 kb on + strand, within Rru_A0493 at 579.239 kb on + strand, within Rru_A0493 at 579.239 kb on + strand, within Rru_A0493 at 579.239 kb on + strand, within Rru_A0493 at 579.239 kb on + strand, within Rru_A0493 at 579.239 kb on + strand, within Rru_A0493 at 579.240 kb on - strand, within Rru_A0493 at 579.240 kb on - strand, within Rru_A0493 at 579.240 kb on - strand, within Rru_A0493 at 579.240 kb on - strand, within Rru_A0493 at 579.240 kb on - strand, within Rru_A0493 at 579.240 kb on - strand, within Rru_A0493 at 579.240 kb on - strand, within Rru_A0493 at 579.243 kb on + strand, within Rru_A0493 at 579.243 kb on + strand, within Rru_A0493 at 579.243 kb on + strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.244 kb on - strand, within Rru_A0493 at 579.245 kb on + strand, within Rru_A0493 at 579.450 kb on + strand, within Rru_A0493 at 579.451 kb on - strand, within Rru_A0493 at 579.512 kb on + strand, within Rru_A0493 at 579.512 kb on + strand, within Rru_A0493 at 579.512 kb on + strand, within Rru_A0493 at 579.512 kb on + strand, within Rru_A0493 at 579.512 kb on + strand, within Rru_A0493 at 579.512 kb on + strand, within Rru_A0493 at 579.513 kb on - strand, within Rru_A0493 at 579.513 kb on - strand, within Rru_A0493 at 579.513 kb on - strand, within Rru_A0493 at 579.513 kb on - strand, within Rru_A0493 at 579.568 kb on - strand, within Rru_A0493 at 579.568 kb on - strand, within Rru_A0493 at 579.569 kb on + strand, within Rru_A0493
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 577,210 - -1.5 577,210 - +0.1 577,210 - +0.1 577,210 - -3.4 577,447 + Rru_A0491 0.29 -2.3 577,447 + Rru_A0491 0.29 +0.1 577,447 + Rru_A0491 0.29 +0.1 577,447 + Rru_A0491 0.29 +2.7 577,448 - Rru_A0491 0.30 -1.9 577,448 - Rru_A0491 0.30 -1.8 577,448 - Rru_A0491 0.30 +0.1 577,448 - Rru_A0491 0.30 -1.5 577,824 + Rru_A0491 0.76 +0.1 577,824 + Rru_A0491 0.76 -1.5 577,825 - Rru_A0491 0.76 +1.3 577,825 - Rru_A0491 0.76 +0.1 577,912 + Rru_A0491 0.87 -1.8 577,912 + Rru_A0491 0.87 -2.3 577,989 + +0.5 577,989 + -1.0 577,990 - -1.9 578,047 - -1.7 578,080 + Rru_A0492 0.12 -1.4 578,095 - Rru_A0492 0.14 +1.1 578,284 + Rru_A0492 0.39 +0.1 578,284 + Rru_A0492 0.39 -0.5 578,284 + Rru_A0492 0.39 -1.9 578,285 - Rru_A0492 0.39 +0.1 578,285 - Rru_A0492 0.39 -2.2 578,285 - Rru_A0492 0.39 -2.9 578,764 - -1.3 578,764 - -0.9 578,777 + +0.1 578,778 - +0.1 578,796 + +0.1 579,111 - Rru_A0493 0.20 -1.5 579,239 + Rru_A0493 0.28 +0.1 579,239 + Rru_A0493 0.28 -2.3 579,239 + Rru_A0493 0.28 -2.6 579,239 + Rru_A0493 0.28 -0.9 579,239 + Rru_A0493 0.28 -0.9 579,239 + Rru_A0493 0.28 +0.1 579,239 + Rru_A0493 0.28 +0.1 579,239 + Rru_A0493 0.28 -2.9 579,240 - Rru_A0493 0.28 +0.1 579,240 - Rru_A0493 0.28 -1.5 579,240 - Rru_A0493 0.28 +0.1 579,240 - Rru_A0493 0.28 +0.1 579,240 - Rru_A0493 0.28 -2.5 579,240 - Rru_A0493 0.28 +0.1 579,240 - Rru_A0493 0.28 +0.1 579,243 + Rru_A0493 0.29 +0.1 579,243 + Rru_A0493 0.29 -0.9 579,243 + Rru_A0493 0.29 +0.1 579,244 - Rru_A0493 0.29 +0.1 579,244 - Rru_A0493 0.29 +0.1 579,244 - Rru_A0493 0.29 -0.9 579,244 - Rru_A0493 0.29 +0.1 579,244 - Rru_A0493 0.29 +0.1 579,244 - Rru_A0493 0.29 +0.1 579,244 - Rru_A0493 0.29 -1.3 579,244 - Rru_A0493 0.29 -0.9 579,244 - Rru_A0493 0.29 +0.1 579,244 - Rru_A0493 0.29 +0.1 579,244 - Rru_A0493 0.29 +0.1 579,245 + Rru_A0493 0.29 +0.1 579,450 + Rru_A0493 0.42 +0.1 579,451 - Rru_A0493 0.42 +0.1 579,512 + Rru_A0493 0.46 +0.1 579,512 + Rru_A0493 0.46 -2.5 579,512 + Rru_A0493 0.46 +0.1 579,512 + Rru_A0493 0.46 -0.9 579,512 + Rru_A0493 0.46 -3.5 579,512 + Rru_A0493 0.46 -2.8 579,513 - Rru_A0493 0.46 +0.1 579,513 - Rru_A0493 0.46 +0.1 579,513 - Rru_A0493 0.46 +0.1 579,513 - Rru_A0493 0.46 +0.1 579,568 - Rru_A0493 0.50 +0.1 579,568 - Rru_A0493 0.50 +0.1 579,569 + Rru_A0493 0.50 -1.5
Or see this region's nucleotide sequence