Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0476 and Rru_AR0016 are separated by 86 nucleotides Rru_AR0016 and Rru_A0477 are separated by 140 nucleotides Rru_A0477 and Rru_A0478 are separated by 145 nucleotides
Rru_A0476: Rru_A0476 - OsmC-like protein (NCBI), at 559,038 to 559,610
_A0476
Rru_AR0016: Rru_AR0016 - tRNA-Lys (NCBI), at 559,697 to 559,772
_AR0016
Rru_A0477: Rru_A0477 - hypothetical protein (NCBI), at 559,913 to 560,608
_A0477
Rru_A0478: Rru_A0478 - Radical SAM (NCBI), at 560,754 to 562,100
_A0478
Position (kb) 559
560
561 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 559.047 kb on - strand at 559.056 kb on + strand at 559.056 kb on + strand at 559.057 kb on - strand at 559.164 kb on - strand, within Rru_A0476 at 559.180 kb on - strand, within Rru_A0476 at 559.430 kb on + strand, within Rru_A0476 at 559.430 kb on + strand, within Rru_A0476 at 559.627 kb on + strand at 559.874 kb on - strand at 560.008 kb on + strand, within Rru_A0477 at 560.380 kb on + strand, within Rru_A0477 at 560.393 kb on - strand, within Rru_A0477 at 560.792 kb on - strand at 560.792 kb on - strand at 560.792 kb on - strand at 561.124 kb on + strand, within Rru_A0478 at 561.124 kb on + strand, within Rru_A0478 at 561.124 kb on + strand, within Rru_A0478 at 561.124 kb on + strand, within Rru_A0478 at 561.125 kb on - strand, within Rru_A0478 at 561.125 kb on - strand, within Rru_A0478 at 561.125 kb on - strand, within Rru_A0478 at 561.131 kb on + strand, within Rru_A0478 at 561.132 kb on - strand, within Rru_A0478 at 561.132 kb on - strand, within Rru_A0478 at 561.132 kb on - strand, within Rru_A0478 at 561.133 kb on + strand, within Rru_A0478 at 561.134 kb on - strand, within Rru_A0478 at 561.134 kb on - strand, within Rru_A0478 at 561.236 kb on + strand, within Rru_A0478 at 561.304 kb on - strand, within Rru_A0478 at 561.304 kb on - strand, within Rru_A0478 at 561.386 kb on + strand, within Rru_A0478 at 561.387 kb on - strand, within Rru_A0478 at 561.387 kb on - strand, within Rru_A0478 at 561.387 kb on - strand, within Rru_A0478 at 561.407 kb on - strand, within Rru_A0478 at 561.410 kb on - strand, within Rru_A0478 at 561.451 kb on + strand, within Rru_A0478 at 561.451 kb on + strand, within Rru_A0478 at 561.451 kb on + strand, within Rru_A0478 at 561.452 kb on - strand, within Rru_A0478 at 561.452 kb on - strand, within Rru_A0478 at 561.565 kb on + strand, within Rru_A0478 at 561.565 kb on + strand, within Rru_A0478 at 561.566 kb on - strand, within Rru_A0478
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 559,047 - -0.9 559,056 + +0.1 559,056 + -2.2 559,057 - +0.1 559,164 - Rru_A0476 0.22 +0.1 559,180 - Rru_A0476 0.25 -2.2 559,430 + Rru_A0476 0.68 -0.7 559,430 + Rru_A0476 0.68 -0.9 559,627 + +0.1 559,874 - -2.4 560,008 + Rru_A0477 0.14 -3.1 560,380 + Rru_A0477 0.67 -1.7 560,393 - Rru_A0477 0.69 -2.6 560,792 - +0.1 560,792 - -1.7 560,792 - -1.3 561,124 + Rru_A0478 0.27 -2.4 561,124 + Rru_A0478 0.27 +0.1 561,124 + Rru_A0478 0.27 -1.5 561,124 + Rru_A0478 0.27 -1.3 561,125 - Rru_A0478 0.28 -1.7 561,125 - Rru_A0478 0.28 -3.7 561,125 - Rru_A0478 0.28 -2.9 561,131 + Rru_A0478 0.28 +0.1 561,132 - Rru_A0478 0.28 -0.7 561,132 - Rru_A0478 0.28 -1.9 561,132 - Rru_A0478 0.28 -2.3 561,133 + Rru_A0478 0.28 -1.7 561,134 - Rru_A0478 0.28 -2.1 561,134 - Rru_A0478 0.28 +1.9 561,236 + Rru_A0478 0.36 -1.9 561,304 - Rru_A0478 0.41 +0.1 561,304 - Rru_A0478 0.41 +0.1 561,386 + Rru_A0478 0.47 -1.7 561,387 - Rru_A0478 0.47 +0.1 561,387 - Rru_A0478 0.47 -1.0 561,387 - Rru_A0478 0.47 +0.1 561,407 - Rru_A0478 0.48 +0.5 561,410 - Rru_A0478 0.49 -1.5 561,451 + Rru_A0478 0.52 -0.9 561,451 + Rru_A0478 0.52 -1.5 561,451 + Rru_A0478 0.52 -2.7 561,452 - Rru_A0478 0.52 -2.2 561,452 - Rru_A0478 0.52 -0.3 561,565 + Rru_A0478 0.60 +0.1 561,565 + Rru_A0478 0.60 -2.3 561,566 - Rru_A0478 0.60 +0.1
Or see this region's nucleotide sequence