Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0477

Experiment: acetate; Light intensity 38 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0476 and Rru_AR0016 are separated by 86 nucleotidesRru_AR0016 and Rru_A0477 are separated by 140 nucleotidesRru_A0477 and Rru_A0478 are separated by 145 nucleotides Rru_A0476: Rru_A0476 - OsmC-like protein (NCBI), at 559,038 to 559,610 _A0476 Rru_AR0016: Rru_AR0016 - tRNA-Lys (NCBI), at 559,697 to 559,772 _AR0016 Rru_A0477: Rru_A0477 - hypothetical protein (NCBI), at 559,913 to 560,608 _A0477 Rru_A0478: Rru_A0478 - Radical SAM (NCBI), at 560,754 to 562,100 _A0478 Position (kb) 559 560 561Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 559.047 kb on - strandat 559.056 kb on + strandat 559.056 kb on + strandat 559.057 kb on - strandat 559.164 kb on - strand, within Rru_A0476at 559.180 kb on - strand, within Rru_A0476at 559.430 kb on + strand, within Rru_A0476at 559.430 kb on + strand, within Rru_A0476at 559.627 kb on + strandat 559.874 kb on - strandat 560.008 kb on + strand, within Rru_A0477at 560.380 kb on + strand, within Rru_A0477at 560.393 kb on - strand, within Rru_A0477at 560.792 kb on - strandat 560.792 kb on - strandat 560.792 kb on - strandat 561.124 kb on + strand, within Rru_A0478at 561.124 kb on + strand, within Rru_A0478at 561.124 kb on + strand, within Rru_A0478at 561.124 kb on + strand, within Rru_A0478at 561.125 kb on - strand, within Rru_A0478at 561.125 kb on - strand, within Rru_A0478at 561.125 kb on - strand, within Rru_A0478at 561.131 kb on + strand, within Rru_A0478at 561.132 kb on - strand, within Rru_A0478at 561.132 kb on - strand, within Rru_A0478at 561.132 kb on - strand, within Rru_A0478at 561.133 kb on + strand, within Rru_A0478at 561.134 kb on - strand, within Rru_A0478at 561.134 kb on - strand, within Rru_A0478at 561.236 kb on + strand, within Rru_A0478at 561.304 kb on - strand, within Rru_A0478at 561.304 kb on - strand, within Rru_A0478at 561.386 kb on + strand, within Rru_A0478at 561.387 kb on - strand, within Rru_A0478at 561.387 kb on - strand, within Rru_A0478at 561.387 kb on - strand, within Rru_A0478at 561.407 kb on - strand, within Rru_A0478at 561.410 kb on - strand, within Rru_A0478at 561.451 kb on + strand, within Rru_A0478at 561.451 kb on + strand, within Rru_A0478at 561.451 kb on + strand, within Rru_A0478at 561.452 kb on - strand, within Rru_A0478at 561.452 kb on - strand, within Rru_A0478at 561.565 kb on + strand, within Rru_A0478at 561.565 kb on + strand, within Rru_A0478at 561.566 kb on - strand, within Rru_A0478

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
remove
559,047 - -0.9
559,056 + +0.1
559,056 + -2.2
559,057 - +0.1
559,164 - Rru_A0476 0.22 +0.1
559,180 - Rru_A0476 0.25 -2.2
559,430 + Rru_A0476 0.68 -0.7
559,430 + Rru_A0476 0.68 -0.9
559,627 + +0.1
559,874 - -2.4
560,008 + Rru_A0477 0.14 -3.1
560,380 + Rru_A0477 0.67 -1.7
560,393 - Rru_A0477 0.69 -2.6
560,792 - +0.1
560,792 - -1.7
560,792 - -1.3
561,124 + Rru_A0478 0.27 -2.4
561,124 + Rru_A0478 0.27 +0.1
561,124 + Rru_A0478 0.27 -1.5
561,124 + Rru_A0478 0.27 -1.3
561,125 - Rru_A0478 0.28 -1.7
561,125 - Rru_A0478 0.28 -3.7
561,125 - Rru_A0478 0.28 -2.9
561,131 + Rru_A0478 0.28 +0.1
561,132 - Rru_A0478 0.28 -0.7
561,132 - Rru_A0478 0.28 -1.9
561,132 - Rru_A0478 0.28 -2.3
561,133 + Rru_A0478 0.28 -1.7
561,134 - Rru_A0478 0.28 -2.1
561,134 - Rru_A0478 0.28 +1.9
561,236 + Rru_A0478 0.36 -1.9
561,304 - Rru_A0478 0.41 +0.1
561,304 - Rru_A0478 0.41 +0.1
561,386 + Rru_A0478 0.47 -1.7
561,387 - Rru_A0478 0.47 +0.1
561,387 - Rru_A0478 0.47 -1.0
561,387 - Rru_A0478 0.47 +0.1
561,407 - Rru_A0478 0.48 +0.5
561,410 - Rru_A0478 0.49 -1.5
561,451 + Rru_A0478 0.52 -0.9
561,451 + Rru_A0478 0.52 -1.5
561,451 + Rru_A0478 0.52 -2.7
561,452 - Rru_A0478 0.52 -2.2
561,452 - Rru_A0478 0.52 -0.3
561,565 + Rru_A0478 0.60 +0.1
561,565 + Rru_A0478 0.60 -2.3
561,566 - Rru_A0478 0.60 +0.1

Or see this region's nucleotide sequence