Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0419 and Rru_A0420 are separated by 18 nucleotides Rru_A0420 and Rru_A0421 are separated by 155 nucleotides Rru_A0421 and Rru_A0422 are separated by 95 nucleotides Rru_A0422 and Rru_A0423 are separated by 162 nucleotides Rru_A0423 and Rru_A0424 are separated by 28 nucleotides Rru_A0424 and Rru_A0425 are separated by 100 nucleotides
Rru_A0419: Rru_A0419 - Aminodeoxychorismate lyase (NCBI), at 495,193 to 496,179
_A0419
Rru_A0420: Rru_A0420 - hypothetical protein (NCBI), at 496,198 to 496,593
_A0420
Rru_A0421: Rru_A0421 - hypothetical protein (NCBI), at 496,749 to 497,075
_A0421
Rru_A0422: Rru_A0422 - hypothetical protein (NCBI), at 497,171 to 497,557
_A0422
Rru_A0423: Rru_A0423 - hypothetical protein (NCBI), at 497,720 to 498,124
_A0423
Rru_A0424: Rru_A0424 - hypothetical protein (NCBI), at 498,153 to 498,377
_A0424
Rru_A0425: Rru_A0425 - hypothetical protein (NCBI), at 498,478 to 498,828
_A0425
Position (kb) 497
498 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 496.199 kb on + strand at 496.200 kb on - strand at 496.456 kb on - strand, within Rru_A0420 at 496.657 kb on - strand at 496.750 kb on + strand at 496.979 kb on + strand, within Rru_A0421 at 497.008 kb on + strand, within Rru_A0421 at 497.009 kb on - strand, within Rru_A0421 at 497.009 kb on - strand, within Rru_A0421 at 497.112 kb on - strand at 497.361 kb on + strand, within Rru_A0422 at 497.361 kb on + strand, within Rru_A0422 at 497.362 kb on - strand, within Rru_A0422 at 497.362 kb on - strand, within Rru_A0422 at 497.603 kb on + strand at 497.665 kb on + strand at 497.666 kb on - strand at 497.671 kb on + strand at 497.736 kb on + strand at 497.742 kb on + strand at 497.743 kb on - strand at 498.093 kb on + strand at 498.093 kb on + strand at 498.093 kb on + strand at 498.093 kb on + strand at 498.094 kb on - strand at 498.094 kb on - strand at 498.161 kb on - strand at 498.197 kb on - strand, within Rru_A0424 at 498.331 kb on - strand, within Rru_A0424 at 498.381 kb on + strand at 498.381 kb on + strand at 498.381 kb on + strand at 498.381 kb on + strand at 498.382 kb on - strand at 498.382 kb on - strand at 498.386 kb on + strand at 498.387 kb on - strand at 498.479 kb on + strand at 498.479 kb on + strand at 498.480 kb on - strand at 498.480 kb on - strand at 498.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 496,199 + +0.7 496,200 - +0.1 496,456 - Rru_A0420 0.65 -0.7 496,657 - -1.8 496,750 + -0.9 496,979 + Rru_A0421 0.70 -2.9 497,008 + Rru_A0421 0.79 +0.1 497,009 - Rru_A0421 0.80 +1.0 497,009 - Rru_A0421 0.80 +0.1 497,112 - -0.9 497,361 + Rru_A0422 0.49 -1.7 497,361 + Rru_A0422 0.49 -2.6 497,362 - Rru_A0422 0.49 -0.9 497,362 - Rru_A0422 0.49 +0.1 497,603 + -1.6 497,665 + -0.6 497,666 - -1.0 497,671 + +0.1 497,736 + +0.1 497,742 + -4.1 497,743 - +0.1 498,093 + +0.1 498,093 + +0.1 498,093 + -1.9 498,093 + +0.1 498,094 - -0.9 498,094 - +1.5 498,161 - +0.1 498,197 - Rru_A0424 0.20 -0.8 498,331 - Rru_A0424 0.79 -1.2 498,381 + -1.1 498,381 + +0.1 498,381 + -0.9 498,381 + +0.1 498,382 - +0.1 498,382 - -1.9 498,386 + +0.1 498,387 - -0.8 498,479 + -1.3 498,479 + -0.3 498,480 - +0.1 498,480 - -1.5 498,480 - -1.9
Or see this region's nucleotide sequence