Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0378 and Rru_A0379 are separated by 80 nucleotides Rru_A0379 and Rru_A0380 are separated by 76 nucleotides Rru_A0380 and Rru_A0381 are separated by 42 nucleotides
Rru_A0378: Rru_A0378 - hypothetical protein (NCBI), at 455,135 to 457,768
_A0378
Rru_A0379: Rru_A0379 - Flavodoxin, long chain (NCBI), at 457,849 to 458,331
_A0379
Rru_A0380: Rru_A0380 - Glyoxalase/bleomycin resistance protein/dioxygenase (NCBI), at 458,408 to 458,764
_A0380
Rru_A0381: Rru_A0381 - Major facilitator superfamily transporter MFS_1 (NCBI), at 458,807 to 460,051
_A0381
Position (kb) 458
459 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 457.470 kb on - strand, within Rru_A0378 at 457.502 kb on + strand, within Rru_A0378 at 457.831 kb on + strand at 457.831 kb on + strand at 457.831 kb on + strand at 457.832 kb on - strand at 457.832 kb on - strand at 457.832 kb on - strand at 457.857 kb on + strand at 457.868 kb on - strand at 457.868 kb on - strand at 457.868 kb on - strand at 458.005 kb on + strand, within Rru_A0379 at 458.005 kb on + strand, within Rru_A0379 at 458.005 kb on + strand, within Rru_A0379 at 458.153 kb on - strand, within Rru_A0379 at 458.153 kb on - strand, within Rru_A0379 at 458.209 kb on + strand, within Rru_A0379 at 458.215 kb on + strand, within Rru_A0379 at 458.215 kb on + strand, within Rru_A0379 at 458.215 kb on + strand, within Rru_A0379 at 458.215 kb on + strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.216 kb on - strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.217 kb on + strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.218 kb on - strand, within Rru_A0379 at 458.221 kb on + strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.222 kb on - strand, within Rru_A0379 at 458.444 kb on - strand, within Rru_A0380 at 458.444 kb on - strand, within Rru_A0380 at 458.444 kb on - strand, within Rru_A0380 at 458.446 kb on + strand, within Rru_A0380 at 458.446 kb on + strand, within Rru_A0380 at 458.446 kb on + strand, within Rru_A0380 at 458.446 kb on + strand, within Rru_A0380 at 458.489 kb on + strand, within Rru_A0380 at 458.489 kb on + strand, within Rru_A0380 at 458.489 kb on + strand, within Rru_A0380 at 458.490 kb on - strand, within Rru_A0380 at 458.490 kb on - strand, within Rru_A0380 at 458.490 kb on - strand, within Rru_A0380 at 458.611 kb on - strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.618 kb on + strand, within Rru_A0380 at 458.619 kb on - strand, within Rru_A0380 at 458.749 kb on - strand at 458.792 kb on - strand at 459.138 kb on + strand, within Rru_A0381 at 459.138 kb on + strand, within Rru_A0381 at 459.138 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.345 kb on + strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.346 kb on - strand, within Rru_A0381 at 459.671 kb on - strand, within Rru_A0381
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 457,470 - Rru_A0378 0.89 -1.2 457,502 + Rru_A0378 0.90 -1.5 457,831 + -1.3 457,831 + -0.6 457,831 + -1.9 457,832 - +0.1 457,832 - -1.5 457,832 - +1.7 457,857 + -3.1 457,868 - -1.3 457,868 - +0.1 457,868 - +0.1 458,005 + Rru_A0379 0.32 -0.5 458,005 + Rru_A0379 0.32 +0.1 458,005 + Rru_A0379 0.32 +2.8 458,153 - Rru_A0379 0.63 -0.9 458,153 - Rru_A0379 0.63 -1.5 458,209 + Rru_A0379 0.75 -0.7 458,215 + Rru_A0379 0.76 -1.6 458,215 + Rru_A0379 0.76 -1.1 458,215 + Rru_A0379 0.76 +0.1 458,215 + Rru_A0379 0.76 -1.2 458,216 - Rru_A0379 0.76 -1.1 458,216 - Rru_A0379 0.76 -1.9 458,216 - Rru_A0379 0.76 +0.1 458,216 - Rru_A0379 0.76 +0.1 458,216 - Rru_A0379 0.76 +0.1 458,216 - Rru_A0379 0.76 -1.3 458,217 + Rru_A0379 0.76 -0.2 458,217 + Rru_A0379 0.76 +0.1 458,217 + Rru_A0379 0.76 +2.3 458,217 + Rru_A0379 0.76 -0.9 458,217 + Rru_A0379 0.76 +0.1 458,217 + Rru_A0379 0.76 -0.7 458,217 + Rru_A0379 0.76 +0.1 458,218 - Rru_A0379 0.76 -1.8 458,218 - Rru_A0379 0.76 -1.5 458,218 - Rru_A0379 0.76 +0.1 458,218 - Rru_A0379 0.76 -1.5 458,218 - Rru_A0379 0.76 +0.1 458,218 - Rru_A0379 0.76 +0.1 458,218 - Rru_A0379 0.76 +0.1 458,221 + Rru_A0379 0.77 -3.4 458,222 - Rru_A0379 0.77 -0.9 458,222 - Rru_A0379 0.77 -0.9 458,222 - Rru_A0379 0.77 -0.5 458,222 - Rru_A0379 0.77 -1.6 458,222 - Rru_A0379 0.77 -0.3 458,222 - Rru_A0379 0.77 -0.9 458,444 - Rru_A0380 0.10 +0.1 458,444 - Rru_A0380 0.10 -0.2 458,444 - Rru_A0380 0.10 +0.1 458,446 + Rru_A0380 0.11 +0.1 458,446 + Rru_A0380 0.11 -1.3 458,446 + Rru_A0380 0.11 -1.5 458,446 + Rru_A0380 0.11 -0.9 458,489 + Rru_A0380 0.23 -0.4 458,489 + Rru_A0380 0.23 +0.1 458,489 + Rru_A0380 0.23 +0.1 458,490 - Rru_A0380 0.23 +0.1 458,490 - Rru_A0380 0.23 -1.1 458,490 - Rru_A0380 0.23 +1.1 458,611 - Rru_A0380 0.57 -2.3 458,618 + Rru_A0380 0.59 -1.3 458,618 + Rru_A0380 0.59 +0.3 458,618 + Rru_A0380 0.59 -1.1 458,618 + Rru_A0380 0.59 -1.8 458,618 + Rru_A0380 0.59 +0.1 458,618 + Rru_A0380 0.59 +0.1 458,618 + Rru_A0380 0.59 -0.9 458,618 + Rru_A0380 0.59 +0.7 458,619 - Rru_A0380 0.59 -1.6 458,749 - -1.3 458,792 - -1.4 459,138 + Rru_A0381 0.27 -0.7 459,138 + Rru_A0381 0.27 -2.1 459,138 + Rru_A0381 0.27 -3.0 459,345 + Rru_A0381 0.43 -0.9 459,345 + Rru_A0381 0.43 +0.1 459,345 + Rru_A0381 0.43 +0.1 459,345 + Rru_A0381 0.43 +0.5 459,345 + Rru_A0381 0.43 -1.5 459,346 - Rru_A0381 0.43 +0.1 459,346 - Rru_A0381 0.43 +0.1 459,346 - Rru_A0381 0.43 -1.6 459,346 - Rru_A0381 0.43 -2.9 459,346 - Rru_A0381 0.43 +0.1 459,346 - Rru_A0381 0.43 -0.8 459,671 - Rru_A0381 0.69 -1.2
Or see this region's nucleotide sequence