Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0340

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0339 and Rru_A0340 are separated by 787 nucleotidesRru_A0340 and Rru_A0341 are separated by 259 nucleotides Rru_A0339: Rru_A0339 - Short-chain dehydrogenase/reductase SDR (NCBI), at 409,696 to 410,487 _A0339 Rru_A0340: Rru_A0340 - CRISPR-associated helicase Cas3, core (NCBI), at 411,275 to 413,932 _A0340 Rru_A0341: Rru_A0341 - hypothetical protein (NCBI), at 414,192 to 415,475 _A0341 Position (kb) 411 412 413 414Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 410.317 kb on + strand, within Rru_A0339at 410.500 kb on + strandat 410.501 kb on - strandat 410.501 kb on - strandat 410.687 kb on + strandat 410.688 kb on - strandat 410.901 kb on + strandat 410.901 kb on + strandat 410.902 kb on - strandat 410.902 kb on - strandat 410.978 kb on - strandat 411.356 kb on + strandat 411.357 kb on - strandat 411.549 kb on + strand, within Rru_A0340at 411.549 kb on + strand, within Rru_A0340at 411.597 kb on + strand, within Rru_A0340at 411.622 kb on + strand, within Rru_A0340at 411.622 kb on + strand, within Rru_A0340at 411.622 kb on + strand, within Rru_A0340at 411.622 kb on + strand, within Rru_A0340at 411.622 kb on + strand, within Rru_A0340at 411.622 kb on + strand, within Rru_A0340at 411.623 kb on - strand, within Rru_A0340at 411.623 kb on - strand, within Rru_A0340at 411.623 kb on - strand, within Rru_A0340at 411.623 kb on - strand, within Rru_A0340at 411.623 kb on - strand, within Rru_A0340at 411.623 kb on - strand, within Rru_A0340at 411.623 kb on - strand, within Rru_A0340at 412.007 kb on + strand, within Rru_A0340at 412.007 kb on + strand, within Rru_A0340at 412.007 kb on + strand, within Rru_A0340at 412.008 kb on - strand, within Rru_A0340at 412.008 kb on - strand, within Rru_A0340at 412.008 kb on - strand, within Rru_A0340at 412.008 kb on - strand, within Rru_A0340at 412.008 kb on - strand, within Rru_A0340at 412.122 kb on + strand, within Rru_A0340at 412.122 kb on + strand, within Rru_A0340at 412.123 kb on - strand, within Rru_A0340at 412.123 kb on - strand, within Rru_A0340at 412.123 kb on - strand, within Rru_A0340at 412.123 kb on - strand, within Rru_A0340at 412.123 kb on - strand, within Rru_A0340at 412.123 kb on - strand, within Rru_A0340at 412.123 kb on - strand, within Rru_A0340at 412.274 kb on + strand, within Rru_A0340at 412.275 kb on - strand, within Rru_A0340at 412.389 kb on - strand, within Rru_A0340at 412.617 kb on + strand, within Rru_A0340at 412.802 kb on + strand, within Rru_A0340at 413.346 kb on + strand, within Rru_A0340at 413.346 kb on + strand, within Rru_A0340at 413.346 kb on + strand, within Rru_A0340at 413.347 kb on - strand, within Rru_A0340at 413.414 kb on + strand, within Rru_A0340at 413.570 kb on + strand, within Rru_A0340at 413.570 kb on + strand, within Rru_A0340at 413.571 kb on - strand, within Rru_A0340at 413.583 kb on + strand, within Rru_A0340at 413.583 kb on + strand, within Rru_A0340at 413.583 kb on + strand, within Rru_A0340at 413.583 kb on + strand, within Rru_A0340at 413.584 kb on - strand, within Rru_A0340at 413.584 kb on - strand, within Rru_A0340at 413.584 kb on - strand, within Rru_A0340at 413.584 kb on - strand, within Rru_A0340at 413.584 kb on - strand, within Rru_A0340at 413.584 kb on - strand, within Rru_A0340at 413.584 kb on - strand, within Rru_A0340at 413.584 kb on - strand, within Rru_A0340at 413.663 kb on + strand, within Rru_A0340at 413.992 kb on + strandat 414.116 kb on + strandat 414.188 kb on + strandat 414.332 kb on + strand, within Rru_A0341at 414.332 kb on + strand, within Rru_A0341at 414.332 kb on + strand, within Rru_A0341at 414.332 kb on + strand, within Rru_A0341

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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410,317 + Rru_A0339 0.78 -1.7
410,500 + -1.1
410,501 - -1.9
410,501 - -1.4
410,687 + -1.1
410,688 - -1.1
410,901 + -1.3
410,901 + -3.1
410,902 - -2.0
410,902 - -0.3
410,978 - +0.1
411,356 + -2.3
411,357 - -0.7
411,549 + Rru_A0340 0.10 +0.1
411,549 + Rru_A0340 0.10 -1.7
411,597 + Rru_A0340 0.12 +0.1
411,622 + Rru_A0340 0.13 +0.1
411,622 + Rru_A0340 0.13 +0.1
411,622 + Rru_A0340 0.13 -0.9
411,622 + Rru_A0340 0.13 +0.1
411,622 + Rru_A0340 0.13 -2.2
411,622 + Rru_A0340 0.13 -2.6
411,623 - Rru_A0340 0.13 -2.4
411,623 - Rru_A0340 0.13 -2.4
411,623 - Rru_A0340 0.13 -2.2
411,623 - Rru_A0340 0.13 -1.9
411,623 - Rru_A0340 0.13 -0.6
411,623 - Rru_A0340 0.13 -1.9
411,623 - Rru_A0340 0.13 -1.7
412,007 + Rru_A0340 0.28 -0.5
412,007 + Rru_A0340 0.28 -3.4
412,007 + Rru_A0340 0.28 -1.1
412,008 - Rru_A0340 0.28 +0.1
412,008 - Rru_A0340 0.28 -0.2
412,008 - Rru_A0340 0.28 -0.9
412,008 - Rru_A0340 0.28 -2.2
412,008 - Rru_A0340 0.28 -1.9
412,122 + Rru_A0340 0.32 -0.5
412,122 + Rru_A0340 0.32 -3.2
412,123 - Rru_A0340 0.32 -0.5
412,123 - Rru_A0340 0.32 -1.2
412,123 - Rru_A0340 0.32 -0.9
412,123 - Rru_A0340 0.32 -2.2
412,123 - Rru_A0340 0.32 +0.1
412,123 - Rru_A0340 0.32 -2.2
412,123 - Rru_A0340 0.32 -2.6
412,274 + Rru_A0340 0.38 -2.7
412,275 - Rru_A0340 0.38 -0.9
412,389 - Rru_A0340 0.42 -1.5
412,617 + Rru_A0340 0.50 +0.1
412,802 + Rru_A0340 0.57 -1.7
413,346 + Rru_A0340 0.78 -3.0
413,346 + Rru_A0340 0.78 -0.9
413,346 + Rru_A0340 0.78 -2.9
413,347 - Rru_A0340 0.78 -1.9
413,414 + Rru_A0340 0.80 -2.3
413,570 + Rru_A0340 0.86 +0.1
413,570 + Rru_A0340 0.86 +0.1
413,571 - Rru_A0340 0.86 +4.9
413,583 + Rru_A0340 0.87 +0.1
413,583 + Rru_A0340 0.87 +0.1
413,583 + Rru_A0340 0.87 +0.1
413,583 + Rru_A0340 0.87 -2.2
413,584 - Rru_A0340 0.87 +0.1
413,584 - Rru_A0340 0.87 -1.8
413,584 - Rru_A0340 0.87 -1.9
413,584 - Rru_A0340 0.87 +1.0
413,584 - Rru_A0340 0.87 +0.1
413,584 - Rru_A0340 0.87 +0.1
413,584 - Rru_A0340 0.87 +0.1
413,584 - Rru_A0340 0.87 -1.9
413,663 + Rru_A0340 0.90 -0.5
413,992 + -0.5
414,116 + +0.1
414,188 + +0.1
414,332 + Rru_A0341 0.11 +0.1
414,332 + Rru_A0341 0.11 +0.1
414,332 + Rru_A0341 0.11 -0.5
414,332 + Rru_A0341 0.11 +0.1

Or see this region's nucleotide sequence