Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0223 and Rru_A0224 are separated by 17 nucleotides Rru_A0224 and Rru_A0225 overlap by 4 nucleotides Rru_A0225 and Rru_A0226 are separated by 23 nucleotides
Rru_A0223: Rru_A0223 - Protein of unknown function DUF344 (NCBI), at 274,999 to 276,603
_A0223
Rru_A0224: Rru_A0224 - Protein of unknown function DUF160 (NCBI), at 276,621 to 277,595
_A0224
Rru_A0225: Rru_A0225 - Metal dependent phosphohydrolase, HD region (NCBI), at 277,592 to 278,266
_A0225
Rru_A0226: Rru_A0226 - Major facilitator superfamily MFS_1 (NCBI), at 278,290 to 279,630
_A0226
Position (kb) 276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 275.622 kb on + strand, within Rru_A0223 at 275.622 kb on + strand, within Rru_A0223 at 275.622 kb on + strand, within Rru_A0223 at 275.623 kb on - strand, within Rru_A0223 at 275.623 kb on - strand, within Rru_A0223 at 275.647 kb on + strand, within Rru_A0223 at 275.647 kb on + strand, within Rru_A0223 at 275.648 kb on - strand, within Rru_A0223 at 275.880 kb on + strand, within Rru_A0223 at 275.881 kb on - strand, within Rru_A0223 at 275.881 kb on - strand, within Rru_A0223 at 275.881 kb on - strand, within Rru_A0223 at 275.908 kb on + strand, within Rru_A0223 at 275.908 kb on + strand, within Rru_A0223 at 275.908 kb on + strand, within Rru_A0223 at 275.908 kb on + strand, within Rru_A0223 at 275.909 kb on - strand, within Rru_A0223 at 275.909 kb on - strand, within Rru_A0223 at 276.118 kb on + strand, within Rru_A0223 at 276.118 kb on + strand, within Rru_A0223 at 276.119 kb on - strand, within Rru_A0223 at 276.119 kb on - strand, within Rru_A0223 at 276.142 kb on - strand, within Rru_A0223 at 276.217 kb on + strand, within Rru_A0223 at 276.218 kb on - strand, within Rru_A0223 at 276.218 kb on - strand, within Rru_A0223 at 276.218 kb on - strand, within Rru_A0223 at 276.218 kb on - strand, within Rru_A0223 at 276.247 kb on + strand, within Rru_A0223 at 276.248 kb on - strand, within Rru_A0223 at 276.249 kb on + strand, within Rru_A0223 at 276.386 kb on + strand, within Rru_A0223 at 276.387 kb on - strand, within Rru_A0223 at 276.427 kb on + strand, within Rru_A0223 at 276.428 kb on - strand, within Rru_A0223 at 276.428 kb on - strand, within Rru_A0223 at 276.474 kb on - strand at 276.474 kb on - strand at 276.601 kb on + strand at 276.602 kb on - strand at 276.602 kb on - strand at 276.622 kb on + strand at 276.679 kb on + strand at 276.680 kb on - strand at 276.797 kb on - strand, within Rru_A0224 at 276.799 kb on + strand, within Rru_A0224 at 277.192 kb on + strand, within Rru_A0224 at 277.193 kb on - strand, within Rru_A0224 at 277.276 kb on + strand, within Rru_A0224 at 277.495 kb on + strand, within Rru_A0224 at 277.496 kb on - strand, within Rru_A0224 at 277.936 kb on - strand, within Rru_A0225 at 277.936 kb on - strand, within Rru_A0225 at 277.936 kb on - strand, within Rru_A0225 at 278.481 kb on + strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.482 kb on - strand, within Rru_A0226 at 278.484 kb on - strand, within Rru_A0226 at 278.592 kb on + strand, within Rru_A0226 at 278.594 kb on + strand, within Rru_A0226 at 278.595 kb on - strand, within Rru_A0226
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 275,622 + Rru_A0223 0.39 +0.9 275,622 + Rru_A0223 0.39 +0.1 275,622 + Rru_A0223 0.39 -1.0 275,623 - Rru_A0223 0.39 -2.3 275,623 - Rru_A0223 0.39 +0.4 275,647 + Rru_A0223 0.40 +0.2 275,647 + Rru_A0223 0.40 -2.2 275,648 - Rru_A0223 0.40 +0.1 275,880 + Rru_A0223 0.55 +0.1 275,881 - Rru_A0223 0.55 -1.9 275,881 - Rru_A0223 0.55 +0.1 275,881 - Rru_A0223 0.55 -0.9 275,908 + Rru_A0223 0.57 -2.1 275,908 + Rru_A0223 0.57 +0.1 275,908 + Rru_A0223 0.57 -1.9 275,908 + Rru_A0223 0.57 -2.9 275,909 - Rru_A0223 0.57 -1.3 275,909 - Rru_A0223 0.57 +2.7 276,118 + Rru_A0223 0.70 -2.4 276,118 + Rru_A0223 0.70 +0.1 276,119 - Rru_A0223 0.70 -0.1 276,119 - Rru_A0223 0.70 -2.2 276,142 - Rru_A0223 0.71 +0.1 276,217 + Rru_A0223 0.76 +0.1 276,218 - Rru_A0223 0.76 -2.3 276,218 - Rru_A0223 0.76 -2.6 276,218 - Rru_A0223 0.76 -1.1 276,218 - Rru_A0223 0.76 -3.4 276,247 + Rru_A0223 0.78 +0.1 276,248 - Rru_A0223 0.78 +0.1 276,249 + Rru_A0223 0.78 -2.5 276,386 + Rru_A0223 0.86 -1.4 276,387 - Rru_A0223 0.86 +0.1 276,427 + Rru_A0223 0.89 -3.4 276,428 - Rru_A0223 0.89 -0.8 276,428 - Rru_A0223 0.89 +0.1 276,474 - +1.7 276,474 - -0.5 276,601 + +0.1 276,602 - -1.6 276,602 - -1.9 276,622 + +0.1 276,679 + +0.1 276,680 - +0.1 276,797 - Rru_A0224 0.18 +0.1 276,799 + Rru_A0224 0.18 +0.1 277,192 + Rru_A0224 0.59 +0.1 277,193 - Rru_A0224 0.59 +0.1 277,276 + Rru_A0224 0.67 -0.9 277,495 + Rru_A0224 0.90 +0.1 277,496 - Rru_A0224 0.90 +0.1 277,936 - Rru_A0225 0.51 -0.7 277,936 - Rru_A0225 0.51 -0.9 277,936 - Rru_A0225 0.51 -0.9 278,481 + Rru_A0226 0.14 -1.7 278,482 - Rru_A0226 0.14 -0.5 278,482 - Rru_A0226 0.14 +0.1 278,482 - Rru_A0226 0.14 -1.8 278,482 - Rru_A0226 0.14 -1.7 278,484 - Rru_A0226 0.14 -1.7 278,592 + Rru_A0226 0.23 +0.1 278,594 + Rru_A0226 0.23 +0.1 278,595 - Rru_A0226 0.23 -0.5
Or see this region's nucleotide sequence