Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0198

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0197 and Rru_A0198 are separated by 6 nucleotidesRru_A0198 and Rru_A0199 overlap by 27 nucleotidesRru_A0199 and Rru_A0200 are separated by 167 nucleotides Rru_A0197: Rru_A0197 - hypothetical protein (NCBI), at 244,729 to 246,138 _A0197 Rru_A0198: Rru_A0198 - hypothetical protein (NCBI), at 246,145 to 248,130 _A0198 Rru_A0199: Rru_A0199 - hypothetical protein (NCBI), at 248,104 to 248,298 _A0199 Rru_A0200: Rru_A0200 - Restriction endonuclease (NCBI), at 248,466 to 249,677 _A0200 Position (kb) 246 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 245.277 kb on + strand, within Rru_A0197at 245.277 kb on + strand, within Rru_A0197at 245.277 kb on + strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.278 kb on - strand, within Rru_A0197at 245.353 kb on + strand, within Rru_A0197at 245.451 kb on + strand, within Rru_A0197at 245.451 kb on + strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.452 kb on - strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.542 kb on + strand, within Rru_A0197at 245.543 kb on - strand, within Rru_A0197at 245.544 kb on + strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.545 kb on - strand, within Rru_A0197at 245.586 kb on + strand, within Rru_A0197at 245.586 kb on + strand, within Rru_A0197at 245.586 kb on + strand, within Rru_A0197at 245.587 kb on - strand, within Rru_A0197at 245.710 kb on + strand, within Rru_A0197at 245.710 kb on + strand, within Rru_A0197at 245.711 kb on - strand, within Rru_A0197at 245.711 kb on - strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.743 kb on + strand, within Rru_A0197at 245.744 kb on - strand, within Rru_A0197at 245.744 kb on - strand, within Rru_A0197at 245.744 kb on - strand, within Rru_A0197at 245.752 kb on + strand, within Rru_A0197at 245.752 kb on + strand, within Rru_A0197at 245.753 kb on - strand, within Rru_A0197at 245.800 kb on + strand, within Rru_A0197at 245.800 kb on + strand, within Rru_A0197at 246.534 kb on + strand, within Rru_A0198at 246.545 kb on - strand, within Rru_A0198at 246.545 kb on - strand, within Rru_A0198at 246.655 kb on + strand, within Rru_A0198at 246.656 kb on - strand, within Rru_A0198at 246.664 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.048 kb on + strand, within Rru_A0198at 247.049 kb on - strand, within Rru_A0198at 247.049 kb on - strand, within Rru_A0198at 247.049 kb on - strand, within Rru_A0198at 247.114 kb on + strand, within Rru_A0198at 247.259 kb on + strand, within Rru_A0198at 247.260 kb on - strand, within Rru_A0198at 247.397 kb on - strand, within Rru_A0198at 247.727 kb on + strand, within Rru_A0198at 247.836 kb on + strand, within Rru_A0198at 247.837 kb on - strand, within Rru_A0198at 247.859 kb on + strand, within Rru_A0198at 248.128 kb on + strandat 248.128 kb on + strandat 248.235 kb on + strand, within Rru_A0199at 248.235 kb on + strand, within Rru_A0199at 248.235 kb on + strand, within Rru_A0199at 248.236 kb on - strand, within Rru_A0199at 248.332 kb on + strandat 248.332 kb on + strandat 248.333 kb on - strandat 248.333 kb on - strandat 248.333 kb on - strandat 248.333 kb on - strandat 248.372 kb on + strandat 248.373 kb on - strandat 248.416 kb on + strandat 248.416 kb on + strandat 248.421 kb on - strandat 248.614 kb on - strand, within Rru_A0200at 248.682 kb on - strand, within Rru_A0200at 248.695 kb on + strand, within Rru_A0200at 248.696 kb on - strand, within Rru_A0200at 248.737 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.789 kb on + strand, within Rru_A0200at 248.790 kb on - strand, within Rru_A0200at 248.790 kb on - strand, within Rru_A0200at 248.793 kb on + strand, within Rru_A0200at 248.835 kb on + strand, within Rru_A0200at 248.855 kb on - strand, within Rru_A0200at 248.867 kb on - strand, within Rru_A0200at 248.977 kb on + strand, within Rru_A0200at 248.996 kb on + strand, within Rru_A0200at 248.997 kb on - strand, within Rru_A0200at 248.997 kb on - strand, within Rru_A0200at 248.997 kb on - strand, within Rru_A0200at 249.073 kb on + strand, within Rru_A0200at 249.074 kb on - strand, within Rru_A0200at 249.074 kb on - strand, within Rru_A0200at 249.074 kb on - strand, within Rru_A0200at 249.118 kb on + strand, within Rru_A0200at 249.118 kb on + strand, within Rru_A0200at 249.118 kb on + strand, within Rru_A0200at 249.119 kb on - strand, within Rru_A0200at 249.119 kb on - strand, within Rru_A0200at 249.122 kb on + strand, within Rru_A0200at 249.122 kb on + strand, within Rru_A0200at 249.123 kb on - strand, within Rru_A0200at 249.123 kb on - strand, within Rru_A0200at 249.123 kb on - strand, within Rru_A0200

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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245,277 + Rru_A0197 0.39 -1.5
245,277 + Rru_A0197 0.39 -1.5
245,277 + Rru_A0197 0.39 -1.5
245,278 - Rru_A0197 0.39 -2.2
245,278 - Rru_A0197 0.39 -0.1
245,278 - Rru_A0197 0.39 +0.1
245,278 - Rru_A0197 0.39 +0.1
245,278 - Rru_A0197 0.39 -1.6
245,353 + Rru_A0197 0.44 -0.9
245,451 + Rru_A0197 0.51 -1.3
245,451 + Rru_A0197 0.51 -2.6
245,452 - Rru_A0197 0.51 +0.1
245,452 - Rru_A0197 0.51 -1.2
245,452 - Rru_A0197 0.51 -2.2
245,452 - Rru_A0197 0.51 -2.7
245,542 + Rru_A0197 0.58 +0.1
245,542 + Rru_A0197 0.58 +0.1
245,542 + Rru_A0197 0.58 +0.1
245,542 + Rru_A0197 0.58 -2.2
245,542 + Rru_A0197 0.58 -1.8
245,543 - Rru_A0197 0.58 +0.1
245,544 + Rru_A0197 0.58 -0.9
245,545 - Rru_A0197 0.58 -2.2
245,545 - Rru_A0197 0.58 -0.9
245,545 - Rru_A0197 0.58 +0.1
245,545 - Rru_A0197 0.58 -2.2
245,545 - Rru_A0197 0.58 -2.4
245,586 + Rru_A0197 0.61 -1.6
245,586 + Rru_A0197 0.61 -1.5
245,586 + Rru_A0197 0.61 -1.8
245,587 - Rru_A0197 0.61 -0.3
245,710 + Rru_A0197 0.70 -2.9
245,710 + Rru_A0197 0.70 +0.1
245,711 - Rru_A0197 0.70 -2.2
245,711 - Rru_A0197 0.70 +1.3
245,743 + Rru_A0197 0.72 -2.7
245,743 + Rru_A0197 0.72 -2.2
245,743 + Rru_A0197 0.72 -2.0
245,743 + Rru_A0197 0.72 -0.9
245,743 + Rru_A0197 0.72 +1.1
245,743 + Rru_A0197 0.72 +0.1
245,744 - Rru_A0197 0.72 +0.1
245,744 - Rru_A0197 0.72 -1.8
245,744 - Rru_A0197 0.72 -1.1
245,752 + Rru_A0197 0.73 +0.1
245,752 + Rru_A0197 0.73 -1.1
245,753 - Rru_A0197 0.73 +1.7
245,800 + Rru_A0197 0.76 -3.1
245,800 + Rru_A0197 0.76 -0.9
246,534 + Rru_A0198 0.20 -2.4
246,545 - Rru_A0198 0.20 -2.2
246,545 - Rru_A0198 0.20 +2.4
246,655 + Rru_A0198 0.26 -0.9
246,656 - Rru_A0198 0.26 -0.8
246,664 + Rru_A0198 0.26 +0.1
247,048 + Rru_A0198 0.45 -0.4
247,048 + Rru_A0198 0.45 +0.1
247,048 + Rru_A0198 0.45 -1.8
247,048 + Rru_A0198 0.45 -0.6
247,048 + Rru_A0198 0.45 +0.1
247,049 - Rru_A0198 0.46 +0.1
247,049 - Rru_A0198 0.46 -3.4
247,049 - Rru_A0198 0.46 +0.1
247,114 + Rru_A0198 0.49 +3.0
247,259 + Rru_A0198 0.56 +1.1
247,260 - Rru_A0198 0.56 -1.8
247,397 - Rru_A0198 0.63 -0.8
247,727 + Rru_A0198 0.80 -3.1
247,836 + Rru_A0198 0.85 -1.7
247,837 - Rru_A0198 0.85 -2.5
247,859 + Rru_A0198 0.86 -0.9
248,128 + -1.5
248,128 + -1.4
248,235 + Rru_A0199 0.67 +0.1
248,235 + Rru_A0199 0.67 -1.8
248,235 + Rru_A0199 0.67 -1.9
248,236 - Rru_A0199 0.68 -0.1
248,332 + +0.1
248,332 + -3.4
248,333 - +0.1
248,333 - -1.6
248,333 - +0.1
248,333 - +0.1
248,372 + -1.2
248,373 - -0.6
248,416 + -2.2
248,416 + +0.1
248,421 - +0.1
248,614 - Rru_A0200 0.12 -1.1
248,682 - Rru_A0200 0.18 -1.1
248,695 + Rru_A0200 0.19 -2.2
248,696 - Rru_A0200 0.19 -0.3
248,737 + Rru_A0200 0.22 +0.1
248,789 + Rru_A0200 0.27 +0.3
248,789 + Rru_A0200 0.27 +0.1
248,789 + Rru_A0200 0.27 +0.1
248,789 + Rru_A0200 0.27 -0.9
248,789 + Rru_A0200 0.27 +0.1
248,790 - Rru_A0200 0.27 -1.4
248,790 - Rru_A0200 0.27 +0.1
248,793 + Rru_A0200 0.27 +0.1
248,835 + Rru_A0200 0.30 -0.5
248,855 - Rru_A0200 0.32 +0.1
248,867 - Rru_A0200 0.33 -2.0
248,977 + Rru_A0200 0.42 +0.1
248,996 + Rru_A0200 0.44 -1.7
248,997 - Rru_A0200 0.44 -0.9
248,997 - Rru_A0200 0.44 +1.1
248,997 - Rru_A0200 0.44 +0.1
249,073 + Rru_A0200 0.50 -1.5
249,074 - Rru_A0200 0.50 -0.2
249,074 - Rru_A0200 0.50 +0.1
249,074 - Rru_A0200 0.50 -0.4
249,118 + Rru_A0200 0.54 +0.1
249,118 + Rru_A0200 0.54 -0.9
249,118 + Rru_A0200 0.54 +0.1
249,119 - Rru_A0200 0.54 +0.1
249,119 - Rru_A0200 0.54 -1.8
249,122 + Rru_A0200 0.54 -1.1
249,122 + Rru_A0200 0.54 -1.3
249,123 - Rru_A0200 0.54 -2.4
249,123 - Rru_A0200 0.54 -2.1
249,123 - Rru_A0200 0.54 +0.1

Or see this region's nucleotide sequence