Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0152

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0150 and Rru_A0151 are separated by 61 nucleotidesRru_A0151 and Rru_A0152 overlap by 4 nucleotidesRru_A0152 and Rru_A0153 are separated by 973 nucleotides Rru_A0150: Rru_A0150 - hypothetical protein (NCBI), at 174,994 to 175,677 _A0150 Rru_A0151: Rru_A0151 - hypothetical protein (NCBI), at 175,739 to 176,482 _A0151 Rru_A0152: Rru_A0152 - hypothetical protein (NCBI), at 176,479 to 176,895 _A0152 Rru_A0153: Rru_A0153 - Endonuclease III/Nth (NCBI), at 177,869 to 178,582 _A0153 Position (kb) 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 175.676 kb on - strandat 175.690 kb on + strandat 175.690 kb on + strandat 175.691 kb on - strandat 176.026 kb on + strand, within Rru_A0151at 176.027 kb on - strand, within Rru_A0151at 176.027 kb on - strand, within Rru_A0151at 176.764 kb on + strand, within Rru_A0152at 176.764 kb on + strand, within Rru_A0152at 176.764 kb on + strand, within Rru_A0152at 176.894 kb on - strandat 177.003 kb on + strandat 177.089 kb on + strandat 177.104 kb on - strandat 177.108 kb on - strandat 177.154 kb on + strandat 177.264 kb on - strandat 177.265 kb on + strandat 177.367 kb on - strandat 177.404 kb on - strandat 177.448 kb on - strandat 177.448 kb on - strandat 177.478 kb on - strandat 177.737 kb on + strandat 177.737 kb on + strandat 177.755 kb on + strandat 177.757 kb on + strandat 177.843 kb on + strandat 177.850 kb on + strandat 177.850 kb on + strandat 177.851 kb on - strandat 177.872 kb on + strandat 177.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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175,676 - +1.4
175,690 + -2.5
175,690 + +0.1
175,691 - -1.8
176,026 + Rru_A0151 0.39 +0.1
176,027 - Rru_A0151 0.39 +2.1
176,027 - Rru_A0151 0.39 +0.1
176,764 + Rru_A0152 0.68 -2.2
176,764 + Rru_A0152 0.68 -1.2
176,764 + Rru_A0152 0.68 -2.6
176,894 - -0.2
177,003 + +0.1
177,089 + +0.1
177,104 - +0.1
177,108 - +0.1
177,154 + -0.9
177,264 - +0.1
177,265 + -2.8
177,367 - -1.2
177,404 - +0.1
177,448 - +0.1
177,448 - -2.2
177,478 - -1.9
177,737 + +0.1
177,737 + -3.4
177,755 + -1.2
177,757 + -1.5
177,843 + +0.1
177,850 + +0.1
177,850 + -1.9
177,851 - -1.1
177,872 + +0.1
177,873 - +0.1

Or see this region's nucleotide sequence