Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0134 and Rru_A0135 are separated by 59 nucleotides Rru_A0135 and Rru_A0136 are separated by 118 nucleotides Rru_A0136 and Rru_A0137 are separated by 188 nucleotides
Rru_A0134: Rru_A0134 - Succinic semialdehyde dehydrogenase (NCBI), at 157,179 to 158,666
_A0134
Rru_A0135: Rru_A0135 - molybdenum ABC transporter ATP-binding protein (NCBI), at 158,726 to 159,301
_A0135
Rru_A0136: Rru_A0136 - Protein of unknown function DUF6, transmembrane (NCBI), at 159,420 to 160,346
_A0136
Rru_A0137: Rru_A0137 - TRAP transporter solute receptor, TAXI family (NCBI), at 160,535 to 161,587
_A0137
Position (kb) 159
160
161 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 158.463 kb on + strand, within Rru_A0134 at 158.464 kb on - strand, within Rru_A0134 at 158.464 kb on - strand, within Rru_A0134 at 158.464 kb on - strand, within Rru_A0134 at 158.512 kb on + strand, within Rru_A0134 at 158.512 kb on + strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.513 kb on - strand, within Rru_A0134 at 158.643 kb on + strand at 158.643 kb on + strand at 158.643 kb on + strand at 158.643 kb on + strand at 158.643 kb on + strand at 158.644 kb on - strand at 158.644 kb on - strand at 158.644 kb on - strand at 159.076 kb on - strand, within Rru_A0135 at 159.085 kb on + strand, within Rru_A0135 at 159.185 kb on + strand, within Rru_A0135 at 159.185 kb on + strand, within Rru_A0135 at 159.185 kb on + strand, within Rru_A0135 at 159.186 kb on - strand, within Rru_A0135 at 159.189 kb on + strand, within Rru_A0135 at 159.189 kb on + strand, within Rru_A0135 at 159.190 kb on - strand, within Rru_A0135 at 159.304 kb on + strand at 159.304 kb on + strand at 159.305 kb on - strand at 159.305 kb on - strand at 159.305 kb on - strand at 159.343 kb on + strand at 159.678 kb on + strand, within Rru_A0136 at 159.963 kb on + strand, within Rru_A0136 at 159.963 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.055 kb on + strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.056 kb on - strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.200 kb on + strand, within Rru_A0136 at 160.201 kb on - strand, within Rru_A0136 at 160.405 kb on + strand at 160.405 kb on + strand at 160.406 kb on - strand at 160.406 kb on - strand at 160.412 kb on + strand at 160.413 kb on - strand at 160.685 kb on + strand, within Rru_A0137 at 160.686 kb on - strand, within Rru_A0137 at 160.686 kb on - strand, within Rru_A0137 at 160.816 kb on + strand, within Rru_A0137 at 160.816 kb on + strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.887 kb on - strand, within Rru_A0137 at 160.888 kb on + strand, within Rru_A0137 at 160.888 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.949 kb on + strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.950 kb on - strand, within Rru_A0137 at 160.951 kb on + strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 160.952 kb on - strand, within Rru_A0137 at 161.321 kb on + strand, within Rru_A0137 at 161.321 kb on + strand, within Rru_A0137 at 161.322 kb on - strand, within Rru_A0137 at 161.322 kb on - strand, within Rru_A0137
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 158,463 + Rru_A0134 0.86 -1.1 158,464 - Rru_A0134 0.86 +0.1 158,464 - Rru_A0134 0.86 +3.2 158,464 - Rru_A0134 0.86 -1.9 158,512 + Rru_A0134 0.90 +0.1 158,512 + Rru_A0134 0.90 -0.8 158,513 - Rru_A0134 0.90 -2.5 158,513 - Rru_A0134 0.90 -2.5 158,513 - Rru_A0134 0.90 +0.1 158,513 - Rru_A0134 0.90 +0.1 158,643 + +1.2 158,643 + +0.8 158,643 + +2.4 158,643 + +0.1 158,643 + +0.4 158,644 - -2.1 158,644 - -2.1 158,644 - -1.5 159,076 - Rru_A0135 0.61 -2.6 159,085 + Rru_A0135 0.62 -1.5 159,185 + Rru_A0135 0.80 -0.9 159,185 + Rru_A0135 0.80 -0.5 159,185 + Rru_A0135 0.80 -3.6 159,186 - Rru_A0135 0.80 -1.3 159,189 + Rru_A0135 0.80 +0.1 159,189 + Rru_A0135 0.80 -2.7 159,190 - Rru_A0135 0.81 -0.9 159,304 + -0.9 159,304 + -1.9 159,305 - +0.6 159,305 - -1.2 159,305 - -2.9 159,343 + +0.1 159,678 + Rru_A0136 0.28 +0.1 159,963 + Rru_A0136 0.59 +0.1 159,963 + Rru_A0136 0.59 -1.4 160,055 + Rru_A0136 0.69 -1.1 160,055 + Rru_A0136 0.69 +2.4 160,055 + Rru_A0136 0.69 -1.7 160,055 + Rru_A0136 0.69 +0.1 160,056 - Rru_A0136 0.69 -0.5 160,056 - Rru_A0136 0.69 +0.1 160,056 - Rru_A0136 0.69 -1.2 160,200 + Rru_A0136 0.84 +0.1 160,200 + Rru_A0136 0.84 +0.1 160,200 + Rru_A0136 0.84 +1.7 160,201 - Rru_A0136 0.84 +0.1 160,405 + +0.1 160,405 + +0.1 160,406 - -0.9 160,406 - -2.0 160,412 + +1.1 160,413 - -1.6 160,685 + Rru_A0137 0.14 +0.1 160,686 - Rru_A0137 0.14 +0.1 160,686 - Rru_A0137 0.14 +0.1 160,816 + Rru_A0137 0.27 +0.1 160,816 + Rru_A0137 0.27 +0.1 160,887 - Rru_A0137 0.33 +0.1 160,887 - Rru_A0137 0.33 +0.1 160,887 - Rru_A0137 0.33 +0.1 160,888 + Rru_A0137 0.34 +0.1 160,888 + Rru_A0137 0.34 +0.1 160,949 + Rru_A0137 0.39 -0.9 160,949 + Rru_A0137 0.39 -1.5 160,949 + Rru_A0137 0.39 -0.9 160,949 + Rru_A0137 0.39 -0.9 160,950 - Rru_A0137 0.39 -1.5 160,950 - Rru_A0137 0.39 +0.1 160,950 - Rru_A0137 0.39 +0.1 160,950 - Rru_A0137 0.39 -0.9 160,951 + Rru_A0137 0.40 -1.5 160,952 - Rru_A0137 0.40 +0.1 160,952 - Rru_A0137 0.40 +0.1 160,952 - Rru_A0137 0.40 +0.1 161,321 + Rru_A0137 0.75 +0.1 161,321 + Rru_A0137 0.75 -0.9 161,322 - Rru_A0137 0.75 -0.9 161,322 - Rru_A0137 0.75 -0.9
Or see this region's nucleotide sequence