Strain Fitness in Rhodospirillum rubrum S1H around Rru_B0040

Experiment: acetate; Light intensity 38 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate; Light intensity 38 uM
39,813	+		Rru_B0039	0.46	-1.7
39,813	+		Rru_B0039	0.46	-1.4
39,813	+		Rru_B0039	0.46	+0.9
39,813	+		Rru_B0039	0.46	-0.1
39,813	+		Rru_B0039	0.46	-0.1
39,814	-		Rru_B0039	0.46	-0.1
39,814	-		Rru_B0039	0.46	-1.5
39,814	-		Rru_B0039	0.46	+0.5
39,814	-		Rru_B0039	0.46	+1.5
39,942	+		Rru_B0039	0.53	-0.1
39,942	+		Rru_B0039	0.53	-1.2
39,943	-		Rru_B0039	0.53	-1.5
39,943	-		Rru_B0039	0.53	-0.3
40,257	+		Rru_B0039	0.71	-0.7
40,257	+		Rru_B0039	0.71	-2.0
40,258	-		Rru_B0039	0.71	-3.0
40,258	-		Rru_B0039	0.71	-0.1
40,258	-		Rru_B0039	0.71	-1.1
40,258	-		Rru_B0039	0.71	+0.2
40,258	-		Rru_B0039	0.71	-0.1
40,399	-		Rru_B0039	0.79	-0.7
40,399	-		Rru_B0039	0.79	-0.1
40,399	-		Rru_B0039	0.79	-0.8
40,476	+		Rru_B0039	0.83	-0.7
40,476	+		Rru_B0039	0.83	-1.7
40,476	+		Rru_B0039	0.83	-0.1
40,476	+		Rru_B0039	0.83	-2.1
40,477	-		Rru_B0039	0.84	-0.9
40,477	-		Rru_B0039	0.84	-0.6
40,477	-		Rru_B0039	0.84	-0.3
40,477	-		Rru_B0039	0.84	-1.1
40,477	-		Rru_B0039	0.84	-1.6
40,478	+		Rru_B0039	0.84	-1.3
40,478	+		Rru_B0039	0.84	-1.5
40,478	+		Rru_B0039	0.84	-0.1
40,479	-		Rru_B0039	0.84	-2.1
40,479	-		Rru_B0039	0.84	-0.3
40,604	+				-2.0
40,605	-				-0.1
40,605	-				-1.3
40,605	-				-0.1
40,605	-				+3.6
40,764	+				-1.7
40,764	+				-0.1
40,764	+				-3.2
40,764	+				-0.1
40,764	+				-3.1
40,764	+				-1.4
40,764	+				-2.1
40,765	-				-1.7
40,765	-				-0.1
40,765	-				+1.9
40,765	-				-0.0
40,765	-				-0.1
40,765	-				-1.2
40,765	-				+0.3
40,765	-				-0.1
40,765	-				+1.5
40,784	+				-0.1
40,784	+				-0.1
40,784	+				-1.2
40,785	-				-0.1
41,253	+		Rru_B0040	0.32	-1.0
41,253	+		Rru_B0040	0.32	-0.1
41,253	+		Rru_B0040	0.32	-1.0
41,253	+		Rru_B0040	0.32	+0.2
41,253	+		Rru_B0040	0.32	-2.8
41,253	+		Rru_B0040	0.32	-1.7
41,253	+		Rru_B0040	0.32	-0.9
41,253	+		Rru_B0040	0.32	-1.1
41,254	-		Rru_B0040	0.33	-0.1
41,254	-		Rru_B0040	0.33	-1.2
41,254	-		Rru_B0040	0.33	-1.9
41,399	+		Rru_B0040	0.42	-0.3
41,399	+		Rru_B0040	0.42	-0.1
41,399	+		Rru_B0040	0.42	-0.1
41,399	+		Rru_B0040	0.42	-0.1
41,399	+		Rru_B0040	0.42	-0.1
41,399	+		Rru_B0040	0.42	-0.1
41,399	+		Rru_B0040	0.42	-1.0
41,400	-		Rru_B0040	0.42	-1.7
41,400	-		Rru_B0040	0.42	-1.8
41,400	-		Rru_B0040	0.42	-0.1
41,556	+		Rru_B0040	0.53	-3.4
41,556	+		Rru_B0040	0.53	+2.3
41,557	-		Rru_B0040	0.53	-1.2
41,557	-		Rru_B0040	0.53	-0.1
41,557	-		Rru_B0040	0.53	+0.1
41,557	-		Rru_B0040	0.53	-0.9
41,557	-		Rru_B0040	0.53	-2.4
41,557	-		Rru_B0040	0.53	-1.2
41,557	-		Rru_B0040	0.53	+3.1
41,558	+		Rru_B0040	0.53	-2.1
41,559	-		Rru_B0040	0.53	-0.1
41,627	+		Rru_B0040	0.58	-0.1
41,627	+		Rru_B0040	0.58	-1.9
41,627	+		Rru_B0040	0.58	-1.5
41,627	+		Rru_B0040	0.58	-0.1
41,627	+		Rru_B0040	0.58	-1.6
41,628	-		Rru_B0040	0.58	-1.1
41,628	-		Rru_B0040	0.58	-1.0
41,846	+		Rru_B0040	0.73	-1.5
41,846	+		Rru_B0040	0.73	-1.8
41,846	+		Rru_B0040	0.73	-1.1
42,069	-		Rru_B0040	0.88	-0.1
42,078	+		Rru_B0040	0.88	-0.1
42,078	+		Rru_B0040	0.88	-0.1
42,078	+		Rru_B0040	0.88	+4.0
42,078	+		Rru_B0040	0.88	-1.7
42,078	+		Rru_B0040	0.88	-2.3
42,079	-		Rru_B0040	0.88	-2.7
42,079	-		Rru_B0040	0.88	-3.1
42,079	-		Rru_B0040	0.88	-2.1
42,079	-		Rru_B0040	0.88	-1.5
42,081	+		Rru_B0040	0.88	-0.1
42,081	+		Rru_B0040	0.88	-0.1
42,081	+		Rru_B0040	0.88	+0.9
42,081	+		Rru_B0040	0.88	-0.1
42,081	+		Rru_B0040	0.88	-1.8
42,081	+		Rru_B0040	0.88	-1.3
42,081	+		Rru_B0040	0.88	-0.5
42,082	-		Rru_B0040	0.89	-2.7
42,082	-		Rru_B0040	0.89	+3.9
42,082	-		Rru_B0040	0.89	-1.0
42,082	-		Rru_B0040	0.89	-0.1
42,082	-		Rru_B0040	0.89	-0.3
42,082	-		Rru_B0040	0.89	-1.7
42,199	-				-2.2
42,199	-				-3.4
42,199	-				-0.1
42,249	+				-0.1
42,249	+				-1.7
42,250	-				-1.0
42,250	-				-1.7
42,250	-				-1.5
42,250	-				-0.1
42,309	+				-0.1
42,310	-				-2.1
42,318	+				-1.4
42,318	+				-0.7
42,318	+				-1.7
42,318	+				-2.2
42,319	-				-1.2
42,319	-				-0.1
42,319	-				-1.1
42,321	+				-2.9
42,321	+				-0.1
42,321	+				-0.1
42,322	-				-0.1
42,322	-				+0.7
42,326	+				-1.1
42,326	+				-0.1
42,327	-				-1.1
42,327	-				-0.1
42,369	+				-1.0
42,402	+				-2.5
42,402	+				-0.2
42,403	-				-0.1
42,403	-				-0.1
42,534	+		Rru_B0041	0.43	-2.2
42,537	+		Rru_B0041	0.44	-0.4
42,657	+		Rru_B0041	0.83	-0.6
42,657	+		Rru_B0041	0.83	-1.7
42,657	+		Rru_B0041	0.83	-0.4
42,658	-		Rru_B0041	0.83	-0.1
42,672	+		Rru_B0041	0.88	-1.1
42,672	+		Rru_B0041	0.88	-0.1
42,673	-		Rru_B0041	0.88	-0.7
42,673	-		Rru_B0041	0.88	-2.7
42,673	-		Rru_B0041	0.88	-0.4
42,673	-		Rru_B0041	0.88	-1.1
42,708	+				-1.4
42,709	-				-0.7
42,709	-				-3.1
42,727	+				+1.9
42,727	+				-0.1
42,727	+				-0.1
42,727	+				-0.1
42,727	+				-1.7
42,727	+				+2.3
42,728	-				-0.1
42,728	-				-0.6
42,728	-				-2.1
42,728	-				-0.1
42,728	-				-1.1
42,728	-				+0.5
42,728	-				-0.1
42,728	-				-2.5
42,728	-				-2.1
42,728	-				-1.1
42,728	-				-0.1
42,728	-				-2.4
42,728	-				-3.0
42,838	+		Rru_B0042	0.11	-1.8
42,839	-		Rru_B0042	0.11	-1.3
42,839	-		Rru_B0042	0.11	-0.9
42,839	-		Rru_B0042	0.11	-0.1
42,928	+		Rru_B0042	0.21	+1.3
42,928	+		Rru_B0042	0.21	-2.5
42,928	+		Rru_B0042	0.21	-1.6
42,928	+		Rru_B0042	0.21	-1.1
42,928	+		Rru_B0042	0.21	+0.4
42,928	+		Rru_B0042	0.21	-1.1
42,929	-		Rru_B0042	0.22	-0.1
42,929	-		Rru_B0042	0.22	-0.1
42,929	-		Rru_B0042	0.22	-0.7
42,929	-		Rru_B0042	0.22	-1.5