Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20075 and RS_RS20080 overlap by 4 nucleotides RS_RS20080 and RS_RS20085 overlap by 4 nucleotides RS_RS20085 and RS_RS20090 overlap by 4 nucleotides RS_RS20090 and RS_RS20095 overlap by 4 nucleotides
RS_RS20075: RS_RS20075 - bifunctional precorrin-3 methyltransferase/precorrin-6x reductase, at 749,455 to 751,014
_RS20075
RS_RS20080: RS_RS20080 - cobalamin biosynthesis protein CbiG, at 751,011 to 751,775
_RS20080
RS_RS20085: RS_RS20085 - precorrin-4 C(11)-methyltransferase, at 751,772 to 752,587
_RS20085
RS_RS20090: RS_RS20090 - precorrin-2 C(20)-methyltransferase, at 752,584 to 753,315
_RS20090
RS_RS20095: RS_RS20095 - cobalt-precorrin-5B (C(1))-methyltransferase, at 753,312 to 754,463
_RS20095
Position (kb) 751
752
753 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 750.902 kb on + strand at 750.902 kb on + strand at 750.903 kb on - strand at 750.903 kb on - strand at 750.903 kb on - strand at 750.912 kb on - strand at 750.998 kb on + strand at 750.998 kb on + strand at 750.998 kb on + strand at 750.998 kb on + strand at 750.999 kb on - strand at 750.999 kb on - strand at 751.462 kb on + strand, within RS_RS20080 at 751.582 kb on + strand, within RS_RS20080 at 751.583 kb on - strand, within RS_RS20080 at 751.690 kb on + strand, within RS_RS20080 at 751.690 kb on + strand, within RS_RS20080 at 751.690 kb on + strand, within RS_RS20080 at 751.691 kb on - strand, within RS_RS20080 at 751.691 kb on - strand, within RS_RS20080 at 751.691 kb on - strand, within RS_RS20080 at 751.691 kb on - strand, within RS_RS20080 at 751.870 kb on - strand, within RS_RS20085 at 751.870 kb on - strand, within RS_RS20085 at 752.328 kb on + strand, within RS_RS20085 at 752.329 kb on - strand, within RS_RS20085 at 752.329 kb on - strand, within RS_RS20085 at 752.392 kb on - strand, within RS_RS20085 at 752.493 kb on + strand, within RS_RS20085 at 752.493 kb on + strand, within RS_RS20085 at 752.494 kb on - strand, within RS_RS20085 at 752.494 kb on - strand, within RS_RS20085 at 752.494 kb on - strand, within RS_RS20085 at 752.577 kb on + strand at 752.577 kb on + strand at 752.577 kb on + strand at 752.578 kb on - strand at 752.987 kb on + strand, within RS_RS20090 at 752.987 kb on + strand, within RS_RS20090 at 752.987 kb on + strand, within RS_RS20090 at 752.987 kb on + strand, within RS_RS20090 at 752.987 kb on + strand, within RS_RS20090 at 752.988 kb on - strand, within RS_RS20090 at 752.996 kb on + strand, within RS_RS20090 at 752.996 kb on + strand, within RS_RS20090 at 752.996 kb on + strand, within RS_RS20090 at 752.996 kb on + strand, within RS_RS20090 at 752.997 kb on - strand, within RS_RS20090 at 752.997 kb on - strand, within RS_RS20090 at 752.997 kb on - strand, within RS_RS20090 at 752.997 kb on - strand, within RS_RS20090 at 753.023 kb on + strand, within RS_RS20090 at 753.023 kb on + strand, within RS_RS20090 at 753.081 kb on - strand, within RS_RS20090 at 753.081 kb on - strand, within RS_RS20090 at 753.212 kb on + strand, within RS_RS20090 at 753.212 kb on + strand, within RS_RS20090 at 753.212 kb on + strand, within RS_RS20090 at 753.213 kb on - strand, within RS_RS20090 at 753.497 kb on + strand, within RS_RS20095 at 753.497 kb on + strand, within RS_RS20095 at 753.498 kb on - strand, within RS_RS20095
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 750,902 + +0.7 750,902 + -0.6 750,903 - -1.5 750,903 - -2.4 750,903 - -0.8 750,912 - -2.5 750,998 + -1.6 750,998 + -0.6 750,998 + -0.6 750,998 + +1.4 750,999 - -1.2 750,999 - -2.1 751,462 + RS_RS20080 0.59 +1.4 751,582 + RS_RS20080 0.75 -0.7 751,583 - RS_RS20080 0.75 -1.5 751,690 + RS_RS20080 0.89 -2.1 751,690 + RS_RS20080 0.89 -2.0 751,690 + RS_RS20080 0.89 -0.5 751,691 - RS_RS20080 0.89 -0.4 751,691 - RS_RS20080 0.89 -1.3 751,691 - RS_RS20080 0.89 +3.0 751,691 - RS_RS20080 0.89 +0.4 751,870 - RS_RS20085 0.12 -0.3 751,870 - RS_RS20085 0.12 -1.6 752,328 + RS_RS20085 0.68 -2.2 752,329 - RS_RS20085 0.68 -0.6 752,329 - RS_RS20085 0.68 +0.9 752,392 - RS_RS20085 0.76 -1.1 752,493 + RS_RS20085 0.88 +1.4 752,493 + RS_RS20085 0.88 -1.2 752,494 - RS_RS20085 0.88 -0.7 752,494 - RS_RS20085 0.88 +1.4 752,494 - RS_RS20085 0.88 -0.4 752,577 + +0.6 752,577 + +0.1 752,577 + -1.1 752,578 - -2.4 752,987 + RS_RS20090 0.55 -0.1 752,987 + RS_RS20090 0.55 +0.4 752,987 + RS_RS20090 0.55 +1.1 752,987 + RS_RS20090 0.55 +0.0 752,987 + RS_RS20090 0.55 -2.3 752,988 - RS_RS20090 0.55 -0.1 752,996 + RS_RS20090 0.56 -1.5 752,996 + RS_RS20090 0.56 -0.7 752,996 + RS_RS20090 0.56 +0.2 752,996 + RS_RS20090 0.56 -0.5 752,997 - RS_RS20090 0.56 +1.7 752,997 - RS_RS20090 0.56 -0.2 752,997 - RS_RS20090 0.56 +1.4 752,997 - RS_RS20090 0.56 +1.4 753,023 + RS_RS20090 0.60 +0.4 753,023 + RS_RS20090 0.60 +0.1 753,081 - RS_RS20090 0.68 -1.5 753,081 - RS_RS20090 0.68 -2.2 753,212 + RS_RS20090 0.86 -0.4 753,212 + RS_RS20090 0.86 -1.2 753,212 + RS_RS20090 0.86 -2.6 753,213 - RS_RS20090 0.86 +1.4 753,497 + RS_RS20095 0.16 -2.0 753,497 + RS_RS20095 0.16 -0.9 753,498 - RS_RS20095 0.16 -0.2
Or see this region's nucleotide sequence