Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19865 and RS_RS19870 are separated by 138 nucleotides RS_RS19870 and RS_RS19875 overlap by 4 nucleotides RS_RS19875 and RS_RS26145 overlap by 85 nucleotides RS_RS26145 and RS_RS19880 are separated by 256 nucleotides
RS_RS19865: RS_RS19865 - hypothetical protein, at 710,925 to 711,593
_RS19865
RS_RS19870: RS_RS19870 - site-specific DNA-methyltransferase, at 711,732 to 711,974
_RS19870
RS_RS19875: RS_RS19875 - site-specific DNA-methyltransferase, at 711,971 to 712,336
_RS19875
RS_RS26145: RS_RS26145 - type III secretion system effector protein, at 712,252 to 712,908
_RS26145
RS_RS19880: RS_RS19880 - hypothetical protein, at 713,165 to 713,437
_RS19880
Position (kb) 711
712
713 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 710.997 kb on + strand, within RS_RS19865 at 710.997 kb on + strand, within RS_RS19865 at 711.024 kb on + strand, within RS_RS19865 at 711.025 kb on - strand, within RS_RS19865 at 711.025 kb on - strand, within RS_RS19865 at 711.091 kb on - strand, within RS_RS19865 at 711.091 kb on - strand, within RS_RS19865 at 711.525 kb on + strand, within RS_RS19865 at 711.525 kb on + strand, within RS_RS19865 at 711.525 kb on + strand, within RS_RS19865 at 711.525 kb on + strand, within RS_RS19865 at 711.526 kb on - strand, within RS_RS19865 at 711.526 kb on - strand, within RS_RS19865 at 711.526 kb on - strand, within RS_RS19865 at 711.526 kb on - strand, within RS_RS19865 at 711.579 kb on + strand at 711.579 kb on + strand at 711.580 kb on - strand at 711.580 kb on - strand at 711.591 kb on + strand at 711.592 kb on - strand at 711.592 kb on - strand at 711.592 kb on - strand at 711.666 kb on + strand at 711.666 kb on + strand at 711.666 kb on + strand at 711.666 kb on + strand at 711.666 kb on + strand at 711.666 kb on + strand at 711.667 kb on - strand at 711.667 kb on - strand at 711.723 kb on + strand at 711.723 kb on + strand at 711.723 kb on + strand at 711.723 kb on + strand at 711.724 kb on - strand at 711.724 kb on - strand at 711.724 kb on - strand at 711.724 kb on - strand at 711.871 kb on - strand, within RS_RS19870 at 712.121 kb on + strand, within RS_RS19875 at 712.121 kb on + strand, within RS_RS19875 at 712.122 kb on - strand, within RS_RS19875 at 712.122 kb on - strand, within RS_RS19875 at 712.122 kb on - strand, within RS_RS19875 at 712.122 kb on - strand, within RS_RS19875 at 712.194 kb on + strand, within RS_RS19875 at 712.271 kb on + strand at 712.272 kb on - strand at 712.335 kb on - strand at 712.347 kb on - strand, within RS_RS26145 at 712.347 kb on - strand, within RS_RS26145 at 712.403 kb on + strand, within RS_RS26145 at 712.404 kb on - strand, within RS_RS26145 at 712.404 kb on - strand, within RS_RS26145 at 712.404 kb on - strand, within RS_RS26145 at 712.404 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.432 kb on - strand, within RS_RS26145 at 712.500 kb on + strand, within RS_RS26145 at 712.500 kb on + strand, within RS_RS26145 at 712.500 kb on + strand, within RS_RS26145 at 712.656 kb on - strand, within RS_RS26145 at 712.822 kb on + strand, within RS_RS26145 at 712.835 kb on + strand, within RS_RS26145 at 712.877 kb on + strand at 712.878 kb on - strand at 712.878 kb on - strand at 712.890 kb on - strand at 712.900 kb on + strand at 712.900 kb on + strand at 712.900 kb on + strand at 712.900 kb on + strand at 712.901 kb on - strand at 712.901 kb on - strand at 712.901 kb on - strand at 712.901 kb on - strand at 712.902 kb on + strand at 712.902 kb on + strand at 712.902 kb on + strand at 712.902 kb on + strand at 712.903 kb on - strand at 712.937 kb on + strand at 712.937 kb on + strand at 712.937 kb on + strand at 712.937 kb on + strand at 712.938 kb on - strand at 712.977 kb on + strand at 713.000 kb on + strand at 713.000 kb on + strand at 713.080 kb on + strand at 713.080 kb on + strand at 713.080 kb on + strand at 713.080 kb on + strand at 713.166 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 710,997 + RS_RS19865 0.11 -0.9 710,997 + RS_RS19865 0.11 -0.5 711,024 + RS_RS19865 0.15 -0.5 711,025 - RS_RS19865 0.15 -0.8 711,025 - RS_RS19865 0.15 +1.2 711,091 - RS_RS19865 0.25 -0.6 711,091 - RS_RS19865 0.25 -1.2 711,525 + RS_RS19865 0.90 +1.1 711,525 + RS_RS19865 0.90 +2.4 711,525 + RS_RS19865 0.90 -0.8 711,525 + RS_RS19865 0.90 -1.2 711,526 - RS_RS19865 0.90 -0.1 711,526 - RS_RS19865 0.90 +0.5 711,526 - RS_RS19865 0.90 +1.4 711,526 - RS_RS19865 0.90 +0.2 711,579 + -0.7 711,579 + -1.2 711,580 - -1.3 711,580 - -0.3 711,591 + -0.4 711,592 - -0.6 711,592 - +0.5 711,592 - -0.8 711,666 + +2.4 711,666 + +0.5 711,666 + -1.9 711,666 + -0.9 711,666 + -1.3 711,666 + -0.6 711,667 - -1.3 711,667 - -0.1 711,723 + +3.1 711,723 + +1.4 711,723 + -2.9 711,723 + -1.2 711,724 - +0.3 711,724 - +1.7 711,724 - +1.8 711,724 - -2.2 711,871 - RS_RS19870 0.57 +1.4 712,121 + RS_RS19875 0.41 -0.4 712,121 + RS_RS19875 0.41 +0.4 712,122 - RS_RS19875 0.41 +1.0 712,122 - RS_RS19875 0.41 -2.0 712,122 - RS_RS19875 0.41 +0.4 712,122 - RS_RS19875 0.41 -0.0 712,194 + RS_RS19875 0.61 -0.4 712,271 + +0.5 712,272 - -2.2 712,335 - -1.2 712,347 - RS_RS26145 0.14 -0.3 712,347 - RS_RS26145 0.14 -0.8 712,403 + RS_RS26145 0.23 +0.4 712,404 - RS_RS26145 0.23 -0.4 712,404 - RS_RS26145 0.23 +0.4 712,404 - RS_RS26145 0.23 -0.7 712,404 - RS_RS26145 0.23 +1.2 712,432 - RS_RS26145 0.27 -2.2 712,432 - RS_RS26145 0.27 -1.4 712,432 - RS_RS26145 0.27 -0.0 712,432 - RS_RS26145 0.27 +1.0 712,432 - RS_RS26145 0.27 +1.1 712,432 - RS_RS26145 0.27 -0.7 712,500 + RS_RS26145 0.38 -0.5 712,500 + RS_RS26145 0.38 +1.4 712,500 + RS_RS26145 0.38 +1.5 712,656 - RS_RS26145 0.61 +1.2 712,822 + RS_RS26145 0.87 -0.6 712,835 + RS_RS26145 0.89 +0.2 712,877 + -0.3 712,878 - -0.3 712,878 - +0.2 712,890 - -1.5 712,900 + -0.8 712,900 + +1.4 712,900 + +1.3 712,900 + +0.5 712,901 - -0.6 712,901 - +0.9 712,901 - -0.4 712,901 - -1.4 712,902 + -0.6 712,902 + -0.6 712,902 + -0.4 712,902 + -0.0 712,903 - +1.0 712,937 + -1.8 712,937 + -3.0 712,937 + +1.4 712,937 + +3.8 712,938 - +1.5 712,977 + +0.2 713,000 + -0.1 713,000 + -0.2 713,080 + +2.3 713,080 + -0.3 713,080 + -2.5 713,080 + +0.7 713,166 + +0.1
Or see this region's nucleotide sequence