Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19250 and RS_RS26075 overlap by 44 nucleotides RS_RS26075 and RS_RS19255 are separated by 221 nucleotides RS_RS19255 and RS_RS19260 are separated by 124 nucleotides
RS_RS19250: RS_RS19250 - transcriptional regulator GcvA, at 547,453 to 548,367
_RS19250
RS_RS26075: RS_RS26075 - hypothetical protein, at 548,324 to 548,536
_RS26075
RS_RS19255: RS_RS19255 - GntR family transcriptional regulator, at 548,758 to 549,414
_RS19255
RS_RS19260: RS_RS19260 - MFS transporter, at 549,539 to 550,759
_RS19260
Position (kb) 548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 547.898 kb on - strand, within RS_RS19250 at 547.954 kb on + strand, within RS_RS19250 at 547.954 kb on + strand, within RS_RS19250 at 547.954 kb on + strand, within RS_RS19250 at 547.955 kb on - strand, within RS_RS19250 at 547.955 kb on - strand, within RS_RS19250 at 547.955 kb on - strand, within RS_RS19250 at 547.976 kb on + strand, within RS_RS19250 at 547.976 kb on + strand, within RS_RS19250 at 547.976 kb on + strand, within RS_RS19250 at 547.977 kb on - strand, within RS_RS19250 at 547.977 kb on - strand, within RS_RS19250 at 548.278 kb on + strand at 548.279 kb on - strand at 548.279 kb on - strand at 548.281 kb on + strand at 548.281 kb on + strand at 548.281 kb on + strand at 548.282 kb on - strand at 548.282 kb on - strand at 548.282 kb on - strand at 548.282 kb on - strand at 548.291 kb on - strand at 548.291 kb on - strand at 548.429 kb on - strand, within RS_RS26075 at 548.465 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.525 kb on + strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.526 kb on - strand at 548.529 kb on + strand at 548.529 kb on + strand at 548.529 kb on + strand at 548.529 kb on + strand at 548.530 kb on - strand at 549.422 kb on + strand at 549.422 kb on + strand at 549.422 kb on + strand at 549.422 kb on + strand at 549.422 kb on + strand at 549.423 kb on - strand at 549.647 kb on + strand at 549.647 kb on + strand at 549.647 kb on + strand at 549.647 kb on + strand at 549.647 kb on + strand at 549.647 kb on + strand at 549.648 kb on - strand at 549.648 kb on - strand at 549.648 kb on - strand at 549.897 kb on - strand, within RS_RS19260 at 550.225 kb on + strand, within RS_RS19260 at 550.225 kb on + strand, within RS_RS19260 at 550.225 kb on + strand, within RS_RS19260 at 550.225 kb on + strand, within RS_RS19260 at 550.226 kb on - strand, within RS_RS19260 at 550.226 kb on - strand, within RS_RS19260 at 550.226 kb on - strand, within RS_RS19260 at 550.226 kb on - strand, within RS_RS19260 at 550.253 kb on + strand, within RS_RS19260 at 550.253 kb on + strand, within RS_RS19260 at 550.254 kb on - strand, within RS_RS19260
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 547,898 - RS_RS19250 0.49 -1.4 547,954 + RS_RS19250 0.55 +4.2 547,954 + RS_RS19250 0.55 +0.2 547,954 + RS_RS19250 0.55 +0.8 547,955 - RS_RS19250 0.55 -0.1 547,955 - RS_RS19250 0.55 +0.5 547,955 - RS_RS19250 0.55 +1.4 547,976 + RS_RS19250 0.57 +0.9 547,976 + RS_RS19250 0.57 -0.4 547,976 + RS_RS19250 0.57 +0.5 547,977 - RS_RS19250 0.57 -0.7 547,977 - RS_RS19250 0.57 -1.9 548,278 + +0.6 548,279 - +1.4 548,279 - -1.1 548,281 + +0.5 548,281 + +0.2 548,281 + -1.1 548,282 - -0.6 548,282 - +0.6 548,282 - -1.0 548,282 - -1.7 548,291 - +1.4 548,291 - +0.4 548,429 - RS_RS26075 0.49 -0.5 548,465 + +1.4 548,525 + +0.9 548,525 + +0.4 548,525 + +2.0 548,525 + +1.4 548,525 + -1.6 548,525 + +0.2 548,525 + +0.1 548,525 + -0.3 548,526 - -0.1 548,526 - -0.9 548,526 - -1.7 548,526 - +1.4 548,526 - -0.6 548,526 - -0.6 548,526 - -0.8 548,526 - +1.4 548,526 - +1.4 548,529 + -0.1 548,529 + -1.1 548,529 + -0.9 548,529 + -0.6 548,530 - +0.6 549,422 + +3.0 549,422 + +1.4 549,422 + -0.1 549,422 + +1.0 549,422 + -1.7 549,423 - -1.2 549,647 + -0.7 549,647 + -1.1 549,647 + -0.9 549,647 + +0.4 549,647 + +0.1 549,647 + -1.5 549,648 - -0.6 549,648 - +1.4 549,648 - +0.4 549,897 - RS_RS19260 0.29 -1.2 550,225 + RS_RS19260 0.56 -0.9 550,225 + RS_RS19260 0.56 -1.5 550,225 + RS_RS19260 0.56 +1.6 550,225 + RS_RS19260 0.56 +0.9 550,226 - RS_RS19260 0.56 +1.9 550,226 - RS_RS19260 0.56 +1.4 550,226 - RS_RS19260 0.56 +1.4 550,226 - RS_RS19260 0.56 +1.4 550,253 + RS_RS19260 0.58 +0.3 550,253 + RS_RS19260 0.58 -1.4 550,254 - RS_RS19260 0.59 -1.3
Or see this region's nucleotide sequence