Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18795 and RS_RS18800 are separated by 161 nucleotides RS_RS18800 and RS_RS18805 are separated by 29 nucleotides RS_RS18805 and RS_RS18810 are separated by 39 nucleotides
RS_RS18795: RS_RS18795 - flagellar basal body rod protein FlgB, at 448,215 to 448,676
_RS18795
RS_RS18800: RS_RS18800 - flagellar basal body rod protein FlgC, at 448,838 to 449,245
_RS18800
RS_RS18805: RS_RS18805 - flagellar basal body rod modification protein FlgD, at 449,275 to 449,940
_RS18805
RS_RS18810: RS_RS18810 - flagellar hook protein FlgE, at 449,980 to 451,185
_RS18810
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 447.876 kb on + strand at 447.876 kb on + strand at 447.876 kb on + strand at 447.877 kb on - strand at 447.877 kb on - strand at 447.877 kb on - strand at 448.080 kb on + strand at 448.080 kb on + strand at 448.080 kb on + strand at 448.081 kb on - strand at 448.089 kb on + strand at 448.089 kb on + strand at 448.089 kb on + strand at 448.090 kb on - strand at 448.090 kb on - strand at 448.090 kb on - strand at 448.326 kb on + strand, within RS_RS18795 at 448.326 kb on + strand, within RS_RS18795 at 448.326 kb on + strand, within RS_RS18795 at 448.327 kb on - strand, within RS_RS18795 at 448.522 kb on + strand, within RS_RS18795 at 449.108 kb on + strand, within RS_RS18800 at 449.108 kb on + strand, within RS_RS18800 at 449.109 kb on - strand, within RS_RS18800 at 449.200 kb on + strand, within RS_RS18800 at 449.244 kb on - strand at 449.244 kb on - strand at 449.728 kb on + strand, within RS_RS18805 at 449.729 kb on - strand, within RS_RS18805 at 449.729 kb on - strand, within RS_RS18805 at 449.729 kb on - strand, within RS_RS18805 at 449.760 kb on + strand, within RS_RS18805 at 449.761 kb on - strand, within RS_RS18805 at 449.761 kb on - strand, within RS_RS18805 at 449.779 kb on + strand, within RS_RS18805 at 449.779 kb on + strand, within RS_RS18805 at 449.780 kb on - strand, within RS_RS18805 at 449.874 kb on + strand at 450.073 kb on + strand at 450.073 kb on + strand at 450.074 kb on - strand at 450.106 kb on + strand, within RS_RS18810 at 450.106 kb on + strand, within RS_RS18810 at 450.107 kb on - strand, within RS_RS18810
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 447,876 + -1.3 447,876 + +0.3 447,876 + -1.4 447,877 - -0.8 447,877 - -2.1 447,877 - -1.1 448,080 + -0.5 448,080 + -0.6 448,080 + +0.4 448,081 - +1.5 448,089 + +0.5 448,089 + -0.9 448,089 + +1.5 448,090 - -0.3 448,090 - +0.0 448,090 - +0.7 448,326 + RS_RS18795 0.24 +2.1 448,326 + RS_RS18795 0.24 +0.4 448,326 + RS_RS18795 0.24 -0.8 448,327 - RS_RS18795 0.24 -0.4 448,522 + RS_RS18795 0.66 +0.9 449,108 + RS_RS18800 0.66 +0.3 449,108 + RS_RS18800 0.66 +0.8 449,109 - RS_RS18800 0.66 -2.6 449,200 + RS_RS18800 0.89 +0.6 449,244 - +2.2 449,244 - +0.0 449,728 + RS_RS18805 0.68 -1.3 449,729 - RS_RS18805 0.68 -2.1 449,729 - RS_RS18805 0.68 +0.5 449,729 - RS_RS18805 0.68 -0.7 449,760 + RS_RS18805 0.73 -0.3 449,761 - RS_RS18805 0.73 +1.9 449,761 - RS_RS18805 0.73 -0.3 449,779 + RS_RS18805 0.76 +1.7 449,779 + RS_RS18805 0.76 +0.5 449,780 - RS_RS18805 0.76 -1.8 449,874 + -0.8 450,073 + -2.9 450,073 + -1.1 450,074 - -1.2 450,106 + RS_RS18810 0.10 -0.5 450,106 + RS_RS18810 0.10 -0.3 450,107 - RS_RS18810 0.11 -1.8
Or see this region's nucleotide sequence