Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS17455 and RS_RS17460 are separated by 460 nucleotides RS_RS17460 and RS_RS17465 are separated by 30 nucleotides
RS_RS17455: RS_RS17455 - GlxA family transcriptional regulator, at 60,513 to 61,544
_RS17455
RS_RS17460: RS_RS17460 - serine hydroxymethyltransferase, at 62,005 to 63,279
_RS17460
RS_RS17465: RS_RS17465 - membrane dipeptidase, at 63,310 to 64,281
_RS17465
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 61.166 kb on - strand, within RS_RS17455 at 61.166 kb on - strand, within RS_RS17455 at 61.198 kb on + strand, within RS_RS17455 at 61.198 kb on + strand, within RS_RS17455 at 61.198 kb on + strand, within RS_RS17455 at 61.198 kb on + strand, within RS_RS17455 at 61.198 kb on + strand, within RS_RS17455 at 61.199 kb on - strand, within RS_RS17455 at 61.199 kb on - strand, within RS_RS17455 at 61.199 kb on - strand, within RS_RS17455 at 61.296 kb on - strand, within RS_RS17455 at 61.435 kb on + strand, within RS_RS17455 at 61.436 kb on - strand, within RS_RS17455 at 61.623 kb on + strand at 61.623 kb on + strand at 61.623 kb on + strand at 61.798 kb on - strand at 62.180 kb on - strand, within RS_RS17460 at 62.180 kb on - strand, within RS_RS17460 at 62.210 kb on - strand, within RS_RS17460 at 62.224 kb on + strand, within RS_RS17460 at 62.224 kb on + strand, within RS_RS17460 at 62.225 kb on - strand, within RS_RS17460 at 62.427 kb on + strand, within RS_RS17460 at 62.428 kb on - strand, within RS_RS17460 at 62.449 kb on + strand, within RS_RS17460 at 62.450 kb on - strand, within RS_RS17460 at 62.450 kb on - strand, within RS_RS17460 at 62.874 kb on + strand, within RS_RS17460 at 63.613 kb on + strand, within RS_RS17465 at 63.662 kb on - strand, within RS_RS17465 at 63.662 kb on - strand, within RS_RS17465 at 63.739 kb on - strand, within RS_RS17465 at 64.003 kb on + strand, within RS_RS17465 at 64.004 kb on - strand, within RS_RS17465
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 61,166 - RS_RS17455 0.63 +1.6 61,166 - RS_RS17455 0.63 -2.7 61,198 + RS_RS17455 0.66 +0.3 61,198 + RS_RS17455 0.66 -0.0 61,198 + RS_RS17455 0.66 -1.8 61,198 + RS_RS17455 0.66 +0.5 61,198 + RS_RS17455 0.66 -0.8 61,199 - RS_RS17455 0.66 +0.3 61,199 - RS_RS17455 0.66 +1.6 61,199 - RS_RS17455 0.66 -1.0 61,296 - RS_RS17455 0.76 +1.6 61,435 + RS_RS17455 0.89 +1.2 61,436 - RS_RS17455 0.89 +1.6 61,623 + +0.3 61,623 + -1.0 61,623 + +0.0 61,798 - -0.0 62,180 - RS_RS17460 0.14 +0.1 62,180 - RS_RS17460 0.14 +1.0 62,210 - RS_RS17460 0.16 +0.0 62,224 + RS_RS17460 0.17 -0.1 62,224 + RS_RS17460 0.17 -0.0 62,225 - RS_RS17460 0.17 -2.4 62,427 + RS_RS17460 0.33 -2.1 62,428 - RS_RS17460 0.33 +1.0 62,449 + RS_RS17460 0.35 +1.6 62,450 - RS_RS17460 0.35 -0.2 62,450 - RS_RS17460 0.35 +1.6 62,874 + RS_RS17460 0.68 -0.2 63,613 + RS_RS17465 0.31 +0.0 63,662 - RS_RS17465 0.36 -3.2 63,662 - RS_RS17465 0.36 -0.2 63,739 - RS_RS17465 0.44 -0.6 64,003 + RS_RS17465 0.71 +1.6 64,004 - RS_RS17465 0.71 +1.0
Or see this region's nucleotide sequence