Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS11265 and RS_RS11270 are separated by 4 nucleotides RS_RS11270 and RS_RS11275 overlap by 8 nucleotides RS_RS11275 and RS_RS11280 overlap by 4 nucleotides
RS_RS11265: RS_RS11265 - ABC transporter substrate-binding protein, at 2,437,404 to 2,438,582
_RS11265
RS_RS11270: RS_RS11270 - ABC transporter ATP-binding protein, at 2,438,587 to 2,439,288
_RS11270
RS_RS11275: RS_RS11275 - ABC transporter ATP-binding protein, at 2,439,281 to 2,440,054
_RS11275
RS_RS11280: RS_RS11280 - branched-chain amino acid ABC transporter permease, at 2,440,051 to 2,441,076
_RS11280
Position (kb) 2438
2439
2440 Strain fitness (log2 ratio) -1
0
1 at 2437.819 kb on - strand, within RS_RS11265 at 2438.362 kb on - strand, within RS_RS11265 at 2438.532 kb on + strand at 2438.532 kb on + strand at 2438.580 kb on + strand at 2439.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 2,437,819 - RS_RS11265 0.35 -1.2 2,438,362 - RS_RS11265 0.81 -0.7 2,438,532 + +0.8 2,438,532 + -0.1 2,438,580 + -0.5 2,439,307 - -0.5
Or see this region's nucleotide sequence