Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10405

Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS10400 and RS_RS10405 are separated by 13 nucleotidesRS_RS10405 and RS_RS10410 are separated by 148 nucleotides RS_RS10400: RS_RS10400 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 2,246,579 to 2,247,454 _RS10400 RS_RS10405: RS_RS10405 - phosphatidylserine decarboxylase proenzyme, at 2,247,468 to 2,248,115 _RS10405 RS_RS10410: RS_RS10410 - ketol-acid reductoisomerase, at 2,248,264 to 2,249,280 _RS10410 Position (kb) 2247 2248 2249Strain fitness (log2 ratio) -1 0 1at 2248.158 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
remove
2,248,158 - +1.5

Or see this region's nucleotide sequence