Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03475

Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03465 and RS_RS03470 overlap by 8 nucleotidesRS_RS03470 and RS_RS03475 are separated by 80 nucleotidesRS_RS03475 and RS_RS03480 are separated by 41 nucleotides RS_RS03465: RS_RS03465 - glycosyl transferase, at 737,091 to 738,212 _RS03465 RS_RS03470: RS_RS03470 - chain-length determining protein, at 738,205 to 739,107 _RS03470 RS_RS03475: RS_RS03475 - phosphomannomutase/phosphoglucomutase, at 739,188 to 740,573 _RS03475 RS_RS03480: RS_RS03480 - lipopolysaccharide heptosyltransferase I, at 740,615 to 741,613 _RS03480 Position (kb) 739 740 741Strain fitness (log2 ratio) -2 -1 0 1at 738.210 kb on + strandat 738.210 kb on + strandat 738.210 kb on + strandat 738.210 kb on + strandat 738.655 kb on + strand, within RS_RS03470at 738.951 kb on + strand, within RS_RS03470at 738.951 kb on + strand, within RS_RS03470at 741.164 kb on + strand, within RS_RS03480

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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738,210 + +0.9
738,210 + +0.0
738,210 + -2.7
738,210 + +0.9
738,655 + RS_RS03470 0.50 +1.4
738,951 + RS_RS03470 0.83 +1.7
738,951 + RS_RS03470 0.83 +1.6
741,164 + RS_RS03480 0.55 -1.2

Or see this region's nucleotide sequence