Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS03015 and RS_RS03020 are separated by 239 nucleotides RS_RS03020 and RS_RS03025 are separated by 18 nucleotides RS_RS03025 and RS_RS03030 are separated by 10 nucleotides
RS_RS03015: RS_RS03015 - paraquat-inducible protein A, at 649,002 to 649,823
_RS03015
RS_RS03020: RS_RS03020 - hypothetical protein, at 650,063 to 650,500
_RS03020
RS_RS03025: RS_RS03025 - S-formylglutathione hydrolase, at 650,519 to 651,388
_RS03025
RS_RS03030: RS_RS03030 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 651,399 to 652,505
_RS03030
Position (kb) 650
651
652 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 649.580 kb on - strand, within RS_RS03015 at 649.887 kb on + strand at 649.887 kb on + strand at 649.888 kb on - strand at 649.922 kb on - strand at 650.586 kb on + strand at 650.586 kb on + strand at 650.586 kb on + strand at 650.587 kb on - strand at 650.587 kb on - strand at 650.589 kb on + strand at 650.988 kb on + strand, within RS_RS03025 at 651.006 kb on + strand, within RS_RS03025 at 651.006 kb on + strand, within RS_RS03025 at 651.007 kb on - strand, within RS_RS03025 at 651.007 kb on - strand, within RS_RS03025 at 651.007 kb on - strand, within RS_RS03025 at 651.007 kb on - strand, within RS_RS03025 at 651.007 kb on - strand, within RS_RS03025 at 651.058 kb on - strand, within RS_RS03025 at 651.521 kb on - strand, within RS_RS03030 at 651.734 kb on - strand, within RS_RS03030 at 652.102 kb on + strand, within RS_RS03030 at 652.103 kb on - strand, within RS_RS03030 at 652.103 kb on - strand, within RS_RS03030 at 652.241 kb on + strand, within RS_RS03030 at 652.242 kb on - strand, within RS_RS03030 at 652.242 kb on - strand, within RS_RS03030 at 652.243 kb on + strand, within RS_RS03030 at 652.244 kb on - strand, within RS_RS03030 at 652.244 kb on - strand, within RS_RS03030 at 652.372 kb on + strand, within RS_RS03030 at 652.372 kb on + strand, within RS_RS03030 at 652.373 kb on - strand, within RS_RS03030 at 652.373 kb on - strand, within RS_RS03030 at 652.373 kb on - strand, within RS_RS03030 at 652.376 kb on - strand, within RS_RS03030 at 652.376 kb on - strand, within RS_RS03030 at 652.376 kb on - strand, within RS_RS03030
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 649,580 - RS_RS03015 0.70 +2.0 649,887 + -0.4 649,887 + -0.5 649,888 - +1.6 649,922 - -0.1 650,586 + +1.6 650,586 + -0.7 650,586 + -0.7 650,587 - +1.6 650,587 - -1.9 650,589 + -0.7 650,988 + RS_RS03025 0.54 +0.5 651,006 + RS_RS03025 0.56 +1.2 651,006 + RS_RS03025 0.56 -0.3 651,007 - RS_RS03025 0.56 -1.2 651,007 - RS_RS03025 0.56 -0.8 651,007 - RS_RS03025 0.56 -0.2 651,007 - RS_RS03025 0.56 -0.8 651,007 - RS_RS03025 0.56 +0.0 651,058 - RS_RS03025 0.62 -0.8 651,521 - RS_RS03030 0.11 +3.5 651,734 - RS_RS03030 0.30 +1.6 652,102 + RS_RS03030 0.64 +0.2 652,103 - RS_RS03030 0.64 +0.4 652,103 - RS_RS03030 0.64 +1.6 652,241 + RS_RS03030 0.76 +0.2 652,242 - RS_RS03030 0.76 +1.5 652,242 - RS_RS03030 0.76 +0.2 652,243 + RS_RS03030 0.76 +1.5 652,244 - RS_RS03030 0.76 +1.6 652,244 - RS_RS03030 0.76 +1.6 652,372 + RS_RS03030 0.88 -0.8 652,372 + RS_RS03030 0.88 -0.5 652,373 - RS_RS03030 0.88 +0.0 652,373 - RS_RS03030 0.88 -1.2 652,373 - RS_RS03030 0.88 +1.0 652,376 - RS_RS03030 0.88 -0.2 652,376 - RS_RS03030 0.88 +0.1 652,376 - RS_RS03030 0.88 +1.2
Or see this region's nucleotide sequence