Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02915 and RS_RS02920 are separated by 362 nucleotides RS_RS02920 and RS_RS02925 overlap by 4 nucleotides RS_RS02925 and RS_RS02930 are separated by 302 nucleotides
RS_RS02915: RS_RS02915 - avrd-related protein, at 625,470 to 626,328
_RS02915
RS_RS02920: RS_RS02920 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 626,691 to 627,218
_RS02920
RS_RS02925: RS_RS02925 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 627,215 to 628,759
_RS02925
RS_RS02930: RS_RS02930 - MFS transporter, at 629,062 to 630,240
_RS02930
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1
2 at 626.877 kb on + strand, within RS_RS02920 at 626.908 kb on + strand, within RS_RS02920 at 626.908 kb on + strand, within RS_RS02920 at 626.909 kb on - strand, within RS_RS02920 at 626.909 kb on - strand, within RS_RS02920 at 626.909 kb on - strand, within RS_RS02920 at 627.192 kb on - strand at 627.234 kb on + strand at 627.339 kb on + strand at 627.706 kb on - strand, within RS_RS02925 at 627.706 kb on - strand, within RS_RS02925 at 628.125 kb on + strand, within RS_RS02925 at 628.126 kb on - strand, within RS_RS02925 at 628.126 kb on - strand, within RS_RS02925 at 628.152 kb on + strand, within RS_RS02925 at 628.152 kb on + strand, within RS_RS02925 at 628.326 kb on + strand, within RS_RS02925 at 628.326 kb on + strand, within RS_RS02925 at 628.327 kb on - strand, within RS_RS02925 at 628.372 kb on - strand, within RS_RS02925 at 628.540 kb on + strand, within RS_RS02925 at 628.541 kb on - strand, within RS_RS02925 at 629.011 kb on - strand at 629.011 kb on - strand at 629.062 kb on - strand at 629.062 kb on - strand at 629.062 kb on - strand at 629.383 kb on + strand, within RS_RS02930 at 629.384 kb on - strand, within RS_RS02930 at 629.384 kb on - strand, within RS_RS02930 at 629.384 kb on - strand, within RS_RS02930 at 629.384 kb on - strand, within RS_RS02930 at 629.384 kb on - strand, within RS_RS02930 at 629.759 kb on - strand, within RS_RS02930 at 629.759 kb on - strand, within RS_RS02930 at 629.759 kb on - strand, within RS_RS02930
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 626,877 + RS_RS02920 0.35 -0.8 626,908 + RS_RS02920 0.41 -0.2 626,908 + RS_RS02920 0.41 +1.6 626,909 - RS_RS02920 0.41 +0.2 626,909 - RS_RS02920 0.41 +0.5 626,909 - RS_RS02920 0.41 +1.6 627,192 - -0.7 627,234 + +1.6 627,339 + +0.8 627,706 - RS_RS02925 0.32 -2.6 627,706 - RS_RS02925 0.32 +0.6 628,125 + RS_RS02925 0.59 -1.3 628,126 - RS_RS02925 0.59 -1.0 628,126 - RS_RS02925 0.59 +0.5 628,152 + RS_RS02925 0.61 -1.3 628,152 + RS_RS02925 0.61 +1.5 628,326 + RS_RS02925 0.72 +0.3 628,326 + RS_RS02925 0.72 -1.7 628,327 - RS_RS02925 0.72 -1.2 628,372 - RS_RS02925 0.75 +0.0 628,540 + RS_RS02925 0.86 -2.2 628,541 - RS_RS02925 0.86 +2.2 629,011 - +1.6 629,011 - +1.9 629,062 - +1.0 629,062 - -1.4 629,062 - +0.4 629,383 + RS_RS02930 0.27 +1.9 629,384 - RS_RS02930 0.27 +1.6 629,384 - RS_RS02930 0.27 -1.6 629,384 - RS_RS02930 0.27 -1.8 629,384 - RS_RS02930 0.27 -2.1 629,384 - RS_RS02930 0.27 +2.6 629,759 - RS_RS02930 0.59 -1.0 629,759 - RS_RS02930 0.59 +1.6 629,759 - RS_RS02930 0.59 +0.7
Or see this region's nucleotide sequence