Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS01085 and RS_RS01090 are separated by 27 nucleotides RS_RS01090 and RS_RS01095 are separated by 152 nucleotides RS_RS01095 and RS_RS01100 are separated by 45 nucleotides
RS_RS01085: RS_RS01085 - acylphosphatase, at 241,929 to 242,288
_RS01085
RS_RS01090: RS_RS01090 - cupin domain-containing protein, at 242,316 to 242,786
_RS01090
RS_RS01095: RS_RS01095 - hypothetical protein, at 242,939 to 243,850
_RS01095
RS_RS01100: RS_RS01100 - sigma 54-dependent transcriptional regulator, at 243,896 to 245,503
_RS01100
Position (kb) 242
243
244 Strain fitness (log2 ratio) -1
0
1
2
3 at 241.957 kb on - strand at 241.957 kb on - strand at 241.957 kb on - strand at 242.347 kb on + strand at 242.348 kb on - strand at 242.348 kb on - strand at 242.485 kb on + strand, within RS_RS01090 at 242.485 kb on + strand, within RS_RS01090 at 242.485 kb on + strand, within RS_RS01090 at 242.485 kb on + strand, within RS_RS01090 at 242.485 kb on + strand, within RS_RS01090 at 242.486 kb on - strand, within RS_RS01090 at 242.486 kb on - strand, within RS_RS01090 at 242.566 kb on + strand, within RS_RS01090 at 242.566 kb on + strand, within RS_RS01090 at 242.566 kb on + strand, within RS_RS01090 at 242.567 kb on - strand, within RS_RS01090 at 242.567 kb on - strand, within RS_RS01090 at 242.831 kb on + strand at 242.831 kb on + strand at 242.832 kb on - strand at 242.832 kb on - strand at 242.887 kb on + strand at 242.887 kb on + strand at 242.887 kb on + strand at 242.888 kb on - strand at 242.888 kb on - strand at 242.892 kb on + strand at 242.892 kb on + strand at 242.892 kb on + strand at 242.893 kb on - strand at 243.107 kb on - strand, within RS_RS01095 at 243.316 kb on + strand, within RS_RS01095 at 243.683 kb on + strand, within RS_RS01095 at 243.684 kb on - strand, within RS_RS01095 at 243.897 kb on + strand at 243.898 kb on - strand at 243.898 kb on - strand at 243.951 kb on + strand at 244.334 kb on - strand, within RS_RS01100 at 244.384 kb on - strand, within RS_RS01100 at 244.598 kb on + strand, within RS_RS01100 at 244.599 kb on - strand, within RS_RS01100 at 244.670 kb on + strand, within RS_RS01100 at 244.670 kb on + strand, within RS_RS01100 at 244.671 kb on - strand, within RS_RS01100
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 241,957 - -1.4 241,957 - -1.6 241,957 - +1.5 242,347 + +3.4 242,348 - -1.0 242,348 - -0.5 242,485 + RS_RS01090 0.36 -0.1 242,485 + RS_RS01090 0.36 +1.9 242,485 + RS_RS01090 0.36 +0.9 242,485 + RS_RS01090 0.36 +0.6 242,485 + RS_RS01090 0.36 +1.0 242,486 - RS_RS01090 0.36 +0.2 242,486 - RS_RS01090 0.36 -1.4 242,566 + RS_RS01090 0.53 -0.4 242,566 + RS_RS01090 0.53 +1.1 242,566 + RS_RS01090 0.53 +0.5 242,567 - RS_RS01090 0.53 -1.3 242,567 - RS_RS01090 0.53 +1.1 242,831 + -0.1 242,831 + +1.1 242,832 - +0.2 242,832 - +1.0 242,887 + -1.2 242,887 + +1.9 242,887 + -0.4 242,888 - -0.4 242,888 - +0.0 242,892 + -1.4 242,892 + -0.3 242,892 + -0.1 242,893 - +1.1 243,107 - RS_RS01095 0.18 -0.2 243,316 + RS_RS01095 0.41 -0.2 243,683 + RS_RS01095 0.82 -0.4 243,684 - RS_RS01095 0.82 +1.4 243,897 + +0.5 243,898 - -1.7 243,898 - -0.1 243,951 + -0.3 244,334 - RS_RS01100 0.27 -0.1 244,384 - RS_RS01100 0.30 +0.8 244,598 + RS_RS01100 0.44 +0.3 244,599 - RS_RS01100 0.44 +0.6 244,670 + RS_RS01100 0.48 -0.9 244,670 + RS_RS01100 0.48 -1.1 244,671 - RS_RS01100 0.48 -0.9
Or see this region's nucleotide sequence