Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00795 and RS_RS00800 are separated by 110 nucleotides RS_RS00800 and RS_RS00805 are separated by 13 nucleotides RS_RS00805 and RS_RS00810 overlap by 4 nucleotides
RS_RS00795: RS_RS00795 - aldehyde dehydrogenase family protein, at 180,943 to 182,454
_RS00795
RS_RS00800: RS_RS00800 - TetR/AcrR family transcriptional regulator, at 182,565 to 183,317
_RS00800
RS_RS00805: RS_RS00805 - secretion protein HlyD, at 183,331 to 184,302
_RS00805
RS_RS00810: RS_RS00810 - ABC transporter ATP-binding protein, at 184,299 to 185,264
_RS00810
Position (kb) 182
183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 182.087 kb on + strand, within RS_RS00795 at 182.087 kb on + strand, within RS_RS00795 at 182.087 kb on + strand, within RS_RS00795 at 182.088 kb on - strand, within RS_RS00795 at 182.272 kb on - strand, within RS_RS00795 at 182.742 kb on + strand, within RS_RS00800 at 183.309 kb on - strand at 183.427 kb on + strand at 183.428 kb on - strand at 183.428 kb on - strand at 183.437 kb on - strand, within RS_RS00805 at 183.457 kb on + strand, within RS_RS00805 at 183.457 kb on + strand, within RS_RS00805 at 183.457 kb on + strand, within RS_RS00805 at 183.457 kb on + strand, within RS_RS00805 at 183.458 kb on - strand, within RS_RS00805 at 183.458 kb on - strand, within RS_RS00805 at 183.542 kb on + strand, within RS_RS00805 at 183.543 kb on - strand, within RS_RS00805 at 183.980 kb on - strand, within RS_RS00805 at 183.980 kb on - strand, within RS_RS00805 at 184.154 kb on - strand, within RS_RS00805 at 184.192 kb on + strand, within RS_RS00805 at 184.193 kb on - strand, within RS_RS00805 at 184.193 kb on - strand, within RS_RS00805
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 182,087 + RS_RS00795 0.76 -0.4 182,087 + RS_RS00795 0.76 -2.9 182,087 + RS_RS00795 0.76 +1.9 182,088 - RS_RS00795 0.76 +1.9 182,272 - RS_RS00795 0.88 +0.2 182,742 + RS_RS00800 0.24 -0.6 183,309 - -0.0 183,427 + -0.3 183,428 - +0.6 183,428 - -1.4 183,437 - RS_RS00805 0.11 +0.4 183,457 + RS_RS00805 0.13 -0.6 183,457 + RS_RS00805 0.13 +0.9 183,457 + RS_RS00805 0.13 -0.7 183,457 + RS_RS00805 0.13 +0.1 183,458 - RS_RS00805 0.13 +1.9 183,458 - RS_RS00805 0.13 +1.8 183,542 + RS_RS00805 0.22 +0.4 183,543 - RS_RS00805 0.22 -1.6 183,980 - RS_RS00805 0.67 -1.3 183,980 - RS_RS00805 0.67 -0.3 184,154 - RS_RS00805 0.85 +0.0 184,192 + RS_RS00805 0.89 -0.3 184,193 - RS_RS00805 0.89 +1.4 184,193 - RS_RS00805 0.89 +1.5
Or see this region's nucleotide sequence