Experiment: Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS00220 and RS_RS00225 are separated by 100 nucleotides RS_RS00225 and RS_RS00230 are separated by 69 nucleotides RS_RS00230 and RS_RS00235 are separated by 409 nucleotides
RS_RS00220: RS_RS00220 - ABC transporter substrate-binding protein, at 47,608 to 49,200
_RS00220
RS_RS00225: RS_RS00225 - GTP-binding protein, at 49,301 to 50,599
_RS00225
RS_RS00230: RS_RS00230 - RNA polymerase-binding protein DksA, at 50,669 to 51,088
_RS00230
RS_RS00235: RS_RS00235 - GTP-binding protein, at 51,498 to 52,586
_RS00235
Position (kb) 49
50
51 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 48.377 kb on + strand, within RS_RS00220 at 48.378 kb on - strand, within RS_RS00220 at 48.378 kb on - strand, within RS_RS00220 at 48.378 kb on - strand, within RS_RS00220 at 48.378 kb on - strand, within RS_RS00220 at 48.563 kb on + strand, within RS_RS00220 at 48.620 kb on + strand, within RS_RS00220 at 48.621 kb on - strand, within RS_RS00220 at 48.701 kb on + strand, within RS_RS00220 at 48.701 kb on + strand, within RS_RS00220 at 48.701 kb on + strand, within RS_RS00220 at 48.702 kb on - strand, within RS_RS00220 at 48.702 kb on - strand, within RS_RS00220 at 48.702 kb on - strand, within RS_RS00220 at 48.803 kb on + strand, within RS_RS00220 at 48.804 kb on - strand, within RS_RS00220 at 48.804 kb on - strand, within RS_RS00220 at 48.804 kb on - strand, within RS_RS00220 at 48.804 kb on - strand, within RS_RS00220 at 48.804 kb on - strand, within RS_RS00220 at 48.812 kb on + strand, within RS_RS00220 at 48.812 kb on + strand, within RS_RS00220 at 48.813 kb on - strand, within RS_RS00220 at 48.813 kb on - strand, within RS_RS00220 at 48.857 kb on + strand, within RS_RS00220 at 48.857 kb on + strand, within RS_RS00220 at 48.857 kb on + strand, within RS_RS00220 at 48.858 kb on - strand, within RS_RS00220 at 49.219 kb on + strand at 49.710 kb on + strand, within RS_RS00225 at 49.711 kb on - strand, within RS_RS00225 at 49.756 kb on + strand, within RS_RS00225 at 49.756 kb on + strand, within RS_RS00225 at 50.154 kb on + strand, within RS_RS00225 at 50.155 kb on - strand, within RS_RS00225 at 50.305 kb on - strand, within RS_RS00225 at 50.610 kb on - strand at 51.031 kb on - strand, within RS_RS00230 at 51.031 kb on - strand, within RS_RS00230 at 51.072 kb on - strand at 51.378 kb on - strand at 51.378 kb on - strand at 51.378 kb on - strand at 51.378 kb on - strand at 51.378 kb on - strand at 51.392 kb on + strand at 51.393 kb on - strand at 51.393 kb on - strand at 51.393 kb on - strand at 51.393 kb on - strand at 51.393 kb on - strand at 51.397 kb on + strand at 51.398 kb on - strand at 51.398 kb on - strand at 51.398 kb on - strand at 51.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 48,377 + RS_RS00220 0.48 +1.0 48,378 - RS_RS00220 0.48 -0.3 48,378 - RS_RS00220 0.48 +0.4 48,378 - RS_RS00220 0.48 -0.8 48,378 - RS_RS00220 0.48 +1.7 48,563 + RS_RS00220 0.60 -0.9 48,620 + RS_RS00220 0.64 +1.9 48,621 - RS_RS00220 0.64 +1.2 48,701 + RS_RS00220 0.69 +3.9 48,701 + RS_RS00220 0.69 -0.2 48,701 + RS_RS00220 0.69 -0.1 48,702 - RS_RS00220 0.69 +1.9 48,702 - RS_RS00220 0.69 -1.9 48,702 - RS_RS00220 0.69 +0.5 48,803 + RS_RS00220 0.75 +1.9 48,804 - RS_RS00220 0.75 -0.1 48,804 - RS_RS00220 0.75 +1.9 48,804 - RS_RS00220 0.75 -0.2 48,804 - RS_RS00220 0.75 +1.2 48,804 - RS_RS00220 0.75 +1.2 48,812 + RS_RS00220 0.76 -0.7 48,812 + RS_RS00220 0.76 +1.3 48,813 - RS_RS00220 0.76 -0.8 48,813 - RS_RS00220 0.76 +0.0 48,857 + RS_RS00220 0.78 -0.2 48,857 + RS_RS00220 0.78 +2.4 48,857 + RS_RS00220 0.78 -0.5 48,858 - RS_RS00220 0.78 -0.0 49,219 + -0.9 49,710 + RS_RS00225 0.31 +0.2 49,711 - RS_RS00225 0.32 -1.1 49,756 + RS_RS00225 0.35 +1.7 49,756 + RS_RS00225 0.35 -2.0 50,154 + RS_RS00225 0.66 +0.1 50,155 - RS_RS00225 0.66 -1.1 50,305 - RS_RS00225 0.77 +0.1 50,610 - +1.1 51,031 - RS_RS00230 0.86 +1.9 51,031 - RS_RS00230 0.86 +1.9 51,072 - +1.9 51,378 - -1.3 51,378 - +0.4 51,378 - -1.3 51,378 - -1.9 51,378 - -2.2 51,392 + +1.9 51,393 - -1.0 51,393 - -1.5 51,393 - -0.3 51,393 - +2.9 51,393 - -0.4 51,397 + +1.9 51,398 - -0.4 51,398 - -1.8 51,398 - -1.7 51,398 - +1.9
Or see this region's nucleotide sequence