Experiment: R2A with Nickel (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23915 and RR42_RS23920 overlap by 1 nucleotides RR42_RS23920 and RR42_RS23925 overlap by 4 nucleotides RR42_RS23925 and RR42_RS23930 are separated by 272 nucleotides RR42_RS23930 and RR42_RS23935 are separated by 140 nucleotides
RR42_RS23915: RR42_RS23915 - hypothetical protein, at 692,394 to 692,870
_RS23915
RR42_RS23920: RR42_RS23920 - hypothetical protein, at 692,870 to 693,496
_RS23920
RR42_RS23925: RR42_RS23925 - conjugal transfer protein, at 693,493 to 694,548
_RS23925
RR42_RS23930: RR42_RS23930 - hypothetical protein, at 694,821 to 695,156
_RS23930
RR42_RS23935: RR42_RS23935 - hypothetical protein, at 695,297 to 696,442
_RS23935
Position (kb) 693
694
695 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 692.668 kb on - strand, within RR42_RS23915 at 692.901 kb on + strand at 692.901 kb on + strand at 692.905 kb on - strand at 692.909 kb on - strand at 692.964 kb on - strand, within RR42_RS23920 at 693.138 kb on - strand, within RR42_RS23920 at 693.354 kb on - strand, within RR42_RS23920 at 693.392 kb on + strand, within RR42_RS23920 at 693.438 kb on + strand at 693.438 kb on + strand at 693.438 kb on + strand at 693.639 kb on + strand, within RR42_RS23925 at 693.818 kb on + strand, within RR42_RS23925 at 693.819 kb on - strand, within RR42_RS23925 at 693.931 kb on + strand, within RR42_RS23925 at 693.932 kb on - strand, within RR42_RS23925 at 693.946 kb on + strand, within RR42_RS23925 at 693.946 kb on + strand, within RR42_RS23925 at 693.947 kb on - strand, within RR42_RS23925 at 694.025 kb on - strand, within RR42_RS23925 at 694.025 kb on - strand, within RR42_RS23925 at 694.204 kb on + strand, within RR42_RS23925 at 694.204 kb on + strand, within RR42_RS23925 at 694.205 kb on - strand, within RR42_RS23925 at 694.339 kb on + strand, within RR42_RS23925 at 694.339 kb on + strand, within RR42_RS23925 at 694.340 kb on - strand, within RR42_RS23925 at 694.340 kb on - strand, within RR42_RS23925 at 694.372 kb on + strand, within RR42_RS23925 at 694.373 kb on - strand, within RR42_RS23925 at 694.373 kb on - strand, within RR42_RS23925 at 694.390 kb on + strand, within RR42_RS23925 at 694.391 kb on - strand, within RR42_RS23925 at 694.391 kb on - strand, within RR42_RS23925 at 694.504 kb on + strand at 694.555 kb on + strand at 694.828 kb on + strand at 694.828 kb on + strand at 694.829 kb on - strand at 694.829 kb on - strand at 695.289 kb on + strand at 695.450 kb on + strand, within RR42_RS23935 at 695.451 kb on - strand, within RR42_RS23935 at 695.452 kb on + strand, within RR42_RS23935 at 695.453 kb on - strand, within RR42_RS23935 at 695.480 kb on + strand, within RR42_RS23935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.5 mM remove 692,668 - RR42_RS23915 0.57 +1.2 692,901 + +0.1 692,901 + -0.3 692,905 - +1.7 692,909 - +0.5 692,964 - RR42_RS23920 0.15 -0.6 693,138 - RR42_RS23920 0.43 +1.3 693,354 - RR42_RS23920 0.77 -0.5 693,392 + RR42_RS23920 0.83 -0.1 693,438 + +0.1 693,438 + +1.4 693,438 + -0.1 693,639 + RR42_RS23925 0.14 +0.5 693,818 + RR42_RS23925 0.31 -0.3 693,819 - RR42_RS23925 0.31 -1.6 693,931 + RR42_RS23925 0.41 -0.5 693,932 - RR42_RS23925 0.42 +0.5 693,946 + RR42_RS23925 0.43 -0.7 693,946 + RR42_RS23925 0.43 -0.7 693,947 - RR42_RS23925 0.43 -0.2 694,025 - RR42_RS23925 0.50 -0.1 694,025 - RR42_RS23925 0.50 -1.3 694,204 + RR42_RS23925 0.67 +1.2 694,204 + RR42_RS23925 0.67 -0.1 694,205 - RR42_RS23925 0.67 -1.3 694,339 + RR42_RS23925 0.80 +0.1 694,339 + RR42_RS23925 0.80 +1.2 694,340 - RR42_RS23925 0.80 -0.6 694,340 - RR42_RS23925 0.80 +0.7 694,372 + RR42_RS23925 0.83 -1.4 694,373 - RR42_RS23925 0.83 -2.2 694,373 - RR42_RS23925 0.83 -0.3 694,390 + RR42_RS23925 0.85 +2.7 694,391 - RR42_RS23925 0.85 -1.7 694,391 - RR42_RS23925 0.85 -0.0 694,504 + +0.7 694,555 + -0.4 694,828 + +0.9 694,828 + +0.6 694,829 - -0.3 694,829 - +0.4 695,289 + -3.8 695,450 + RR42_RS23935 0.13 -0.4 695,451 - RR42_RS23935 0.13 +0.5 695,452 + RR42_RS23935 0.14 +1.3 695,453 - RR42_RS23935 0.14 +0.2 695,480 + RR42_RS23935 0.16 -0.6
Or see this region's nucleotide sequence