Experiment: R2A with Nickel (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23620 and RR42_RS23625 are separated by 237 nucleotides RR42_RS23625 and RR42_RS23630 are separated by 35 nucleotides
RR42_RS23620: RR42_RS23620 - hypothetical protein, at 625,133 to 627,373
_RS23620
RR42_RS23625: RR42_RS23625 - transporter, at 627,611 to 627,931
_RS23625
RR42_RS23630: RR42_RS23630 - hypothetical protein, at 627,967 to 628,956
_RS23630
Position (kb) 627
628 Strain fitness (log2 ratio) -1
0
1
2 at 626.635 kb on - strand, within RR42_RS23620 at 626.923 kb on - strand, within RR42_RS23620 at 627.025 kb on - strand, within RR42_RS23620 at 627.199 kb on + strand at 627.290 kb on - strand at 627.291 kb on - strand at 627.291 kb on - strand at 627.315 kb on + strand at 627.316 kb on - strand at 627.355 kb on + strand at 627.365 kb on - strand at 627.365 kb on - strand at 627.521 kb on + strand at 627.522 kb on - strand at 627.628 kb on + strand at 627.679 kb on - strand, within RR42_RS23625 at 627.711 kb on + strand, within RR42_RS23625 at 627.711 kb on + strand, within RR42_RS23625 at 627.711 kb on + strand, within RR42_RS23625 at 627.711 kb on + strand, within RR42_RS23625 at 627.712 kb on - strand, within RR42_RS23625 at 627.712 kb on - strand, within RR42_RS23625 at 627.712 kb on - strand, within RR42_RS23625 at 627.787 kb on - strand, within RR42_RS23625 at 627.787 kb on - strand, within RR42_RS23625 at 627.837 kb on + strand, within RR42_RS23625 at 627.882 kb on + strand, within RR42_RS23625 at 628.417 kb on - strand, within RR42_RS23630 at 628.548 kb on - strand, within RR42_RS23630 at 628.706 kb on + strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.721 kb on - strand, within RR42_RS23630 at 628.845 kb on - strand, within RR42_RS23630
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.5 mM remove 626,635 - RR42_RS23620 0.67 +0.5 626,923 - RR42_RS23620 0.80 -0.2 627,025 - RR42_RS23620 0.84 +0.5 627,199 + -0.0 627,290 - +1.9 627,291 - +0.6 627,291 - +0.3 627,315 + +0.5 627,316 - +0.7 627,355 + -0.9 627,365 - +0.3 627,365 - -0.1 627,521 + -0.0 627,522 - -0.3 627,628 + +0.7 627,679 - RR42_RS23625 0.21 +1.7 627,711 + RR42_RS23625 0.31 +1.3 627,711 + RR42_RS23625 0.31 -0.5 627,711 + RR42_RS23625 0.31 -0.8 627,711 + RR42_RS23625 0.31 +1.0 627,712 - RR42_RS23625 0.31 +0.7 627,712 - RR42_RS23625 0.31 -0.2 627,712 - RR42_RS23625 0.31 +0.7 627,787 - RR42_RS23625 0.55 +0.4 627,787 - RR42_RS23625 0.55 -0.4 627,837 + RR42_RS23625 0.70 -0.2 627,882 + RR42_RS23625 0.84 -0.3 628,417 - RR42_RS23630 0.45 +0.1 628,548 - RR42_RS23630 0.59 -1.0 628,706 + RR42_RS23630 0.75 +0.1 628,707 - RR42_RS23630 0.75 -0.2 628,707 - RR42_RS23630 0.75 -0.0 628,707 - RR42_RS23630 0.75 -1.0 628,721 - RR42_RS23630 0.76 +0.3 628,845 - RR42_RS23630 0.89 +0.3
Or see this region's nucleotide sequence