Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21830

Experiment: R2A with Nickel (II) chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS21820 and RR42_RS21825 are separated by 89 nucleotidesRR42_RS21825 and RR42_RS21830 are separated by 96 nucleotidesRR42_RS21830 and RR42_RS21835 are separated by 116 nucleotides RR42_RS21820: RR42_RS21820 - GntR family transcriptional regulator, at 224,526 to 225,230 _RS21820 RR42_RS21825: RR42_RS21825 - hypothetical protein, at 225,320 to 225,868 _RS21825 RR42_RS21830: RR42_RS21830 - transcriptional regulator, at 225,965 to 226,879 _RS21830 RR42_RS21835: RR42_RS21835 - muconate cycloisomerase, at 226,996 to 228,117 _RS21835 Position (kb) 225 226 227Strain fitness (log2 ratio) -3 -2 -1 0 1at 225.072 kb on - strand, within RR42_RS21820at 225.072 kb on - strand, within RR42_RS21820at 225.129 kb on + strand, within RR42_RS21820at 225.216 kb on + strandat 225.216 kb on + strandat 225.216 kb on + strandat 225.217 kb on - strandat 225.217 kb on - strandat 225.296 kb on + strandat 225.321 kb on + strandat 225.322 kb on - strandat 225.584 kb on - strand, within RR42_RS21825at 225.709 kb on + strand, within RR42_RS21825at 225.710 kb on - strand, within RR42_RS21825at 225.710 kb on - strand, within RR42_RS21825at 225.897 kb on + strandat 225.897 kb on + strandat 226.040 kb on + strandat 226.066 kb on - strand, within RR42_RS21830at 226.066 kb on - strand, within RR42_RS21830at 226.276 kb on - strand, within RR42_RS21830at 226.276 kb on - strand, within RR42_RS21830at 226.491 kb on - strand, within RR42_RS21830at 226.491 kb on - strand, within RR42_RS21830at 226.572 kb on + strand, within RR42_RS21830at 226.573 kb on - strand, within RR42_RS21830at 226.801 kb on + strandat 226.802 kb on - strandat 226.857 kb on + strandat 226.857 kb on + strandat 226.857 kb on + strandat 226.871 kb on + strandat 226.871 kb on + strandat 226.872 kb on - strandat 226.872 kb on - strandat 226.872 kb on - strandat 226.872 kb on - strandat 226.920 kb on + strandat 226.921 kb on - strandat 226.921 kb on - strandat 226.921 kb on - strandat 226.955 kb on + strandat 226.956 kb on - strandat 226.956 kb on - strandat 226.956 kb on - strandat 226.956 kb on - strandat 226.971 kb on - strandat 226.971 kb on - strandat 226.977 kb on + strandat 226.977 kb on + strandat 226.978 kb on - strandat 227.167 kb on + strand, within RR42_RS21835at 227.167 kb on + strand, within RR42_RS21835at 227.167 kb on + strand, within RR42_RS21835at 227.209 kb on - strand, within RR42_RS21835at 227.212 kb on + strand, within RR42_RS21835at 227.213 kb on - strand, within RR42_RS21835at 227.213 kb on - strand, within RR42_RS21835

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.5 mM
remove
225,072 - RR42_RS21820 0.77 +0.3
225,072 - RR42_RS21820 0.77 -1.4
225,129 + RR42_RS21820 0.86 -0.0
225,216 + +0.2
225,216 + +0.2
225,216 + +0.6
225,217 - +0.7
225,217 - +0.9
225,296 + +0.1
225,321 + +1.4
225,322 - +0.5
225,584 - RR42_RS21825 0.48 -0.5
225,709 + RR42_RS21825 0.71 -1.3
225,710 - RR42_RS21825 0.71 -1.6
225,710 - RR42_RS21825 0.71 +0.6
225,897 + +1.1
225,897 + +0.4
226,040 + +0.3
226,066 - RR42_RS21830 0.11 -1.4
226,066 - RR42_RS21830 0.11 -0.9
226,276 - RR42_RS21830 0.34 -3.0
226,276 - RR42_RS21830 0.34 -2.0
226,491 - RR42_RS21830 0.57 -0.4
226,491 - RR42_RS21830 0.57 -0.5
226,572 + RR42_RS21830 0.66 +0.4
226,573 - RR42_RS21830 0.66 +0.3
226,801 + +1.4
226,802 - -1.9
226,857 + -0.2
226,857 + +0.0
226,857 + -0.4
226,871 + -0.4
226,871 + -0.7
226,872 - -0.6
226,872 - -0.7
226,872 - -0.3
226,872 - +0.5
226,920 + -1.4
226,921 - -1.5
226,921 - -0.9
226,921 - +0.5
226,955 + -0.8
226,956 - +0.5
226,956 - -1.6
226,956 - -0.1
226,956 - +0.1
226,971 - +0.8
226,971 - -0.8
226,977 + -0.4
226,977 + -0.3
226,978 - -0.5
227,167 + RR42_RS21835 0.15 +0.2
227,167 + RR42_RS21835 0.15 +0.6
227,167 + RR42_RS21835 0.15 +0.3
227,209 - RR42_RS21835 0.19 -1.3
227,212 + RR42_RS21835 0.19 -0.5
227,213 - RR42_RS21835 0.19 -1.7
227,213 - RR42_RS21835 0.19 -0.4

Or see this region's nucleotide sequence