Experiment: R2A with Nickel (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21145 and RR42_RS21150 overlap by 4 nucleotides RR42_RS21150 and RR42_RS21155 are separated by 101 nucleotides
RR42_RS21145: RR42_RS21145 - hypothetical protein, at 69,066 to 70,427
_RS21145
RR42_RS21150: RR42_RS21150 - hypothetical protein, at 70,424 to 70,780
_RS21150
RR42_RS21155: RR42_RS21155 - ABC transporter substrate-binding protein, at 70,882 to 71,868
_RS21155
Position (kb) 70
71 Strain fitness (log2 ratio) -1
0
1 at 69.802 kb on + strand, within RR42_RS21145 at 69.803 kb on - strand, within RR42_RS21145 at 69.803 kb on - strand, within RR42_RS21145 at 69.889 kb on - strand, within RR42_RS21145 at 70.014 kb on + strand, within RR42_RS21145 at 70.015 kb on - strand, within RR42_RS21145 at 70.015 kb on - strand, within RR42_RS21145 at 70.015 kb on - strand, within RR42_RS21145 at 70.234 kb on + strand, within RR42_RS21145 at 70.308 kb on + strand at 70.308 kb on + strand at 70.309 kb on - strand at 70.461 kb on - strand, within RR42_RS21150 at 70.620 kb on - strand, within RR42_RS21150 at 70.702 kb on + strand, within RR42_RS21150 at 70.823 kb on - strand at 70.833 kb on - strand at 70.891 kb on + strand at 70.892 kb on - strand at 70.892 kb on - strand at 71.064 kb on + strand, within RR42_RS21155 at 71.122 kb on - strand, within RR42_RS21155 at 71.162 kb on - strand, within RR42_RS21155 at 71.162 kb on - strand, within RR42_RS21155 at 71.164 kb on - strand, within RR42_RS21155 at 71.164 kb on - strand, within RR42_RS21155 at 71.227 kb on + strand, within RR42_RS21155 at 71.245 kb on + strand, within RR42_RS21155 at 71.245 kb on + strand, within RR42_RS21155 at 71.245 kb on + strand, within RR42_RS21155 at 71.245 kb on + strand, within RR42_RS21155 at 71.246 kb on - strand, within RR42_RS21155 at 71.246 kb on - strand, within RR42_RS21155 at 71.246 kb on - strand, within RR42_RS21155 at 71.246 kb on - strand, within RR42_RS21155 at 71.447 kb on - strand, within RR42_RS21155 at 71.633 kb on - strand, within RR42_RS21155 at 71.644 kb on + strand, within RR42_RS21155 at 71.644 kb on + strand, within RR42_RS21155 at 71.645 kb on - strand, within RR42_RS21155 at 71.749 kb on + strand, within RR42_RS21155 at 71.750 kb on - strand, within RR42_RS21155
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.5 mM remove 69,802 + RR42_RS21145 0.54 +0.2 69,803 - RR42_RS21145 0.54 +1.0 69,803 - RR42_RS21145 0.54 +0.2 69,889 - RR42_RS21145 0.60 -0.2 70,014 + RR42_RS21145 0.70 +0.1 70,015 - RR42_RS21145 0.70 +0.4 70,015 - RR42_RS21145 0.70 -0.2 70,015 - RR42_RS21145 0.70 -1.3 70,234 + RR42_RS21145 0.86 -0.7 70,308 + +1.2 70,308 + -0.7 70,309 - +0.4 70,461 - RR42_RS21150 0.10 -0.5 70,620 - RR42_RS21150 0.55 -0.9 70,702 + RR42_RS21150 0.78 -1.5 70,823 - +0.3 70,833 - +0.0 70,891 + -1.3 70,892 - +0.6 70,892 - -0.1 71,064 + RR42_RS21155 0.18 -0.2 71,122 - RR42_RS21155 0.24 +0.9 71,162 - RR42_RS21155 0.28 -0.6 71,162 - RR42_RS21155 0.28 +0.7 71,164 - RR42_RS21155 0.29 +0.4 71,164 - RR42_RS21155 0.29 -1.2 71,227 + RR42_RS21155 0.35 -0.7 71,245 + RR42_RS21155 0.37 +0.9 71,245 + RR42_RS21155 0.37 +0.2 71,245 + RR42_RS21155 0.37 +0.8 71,245 + RR42_RS21155 0.37 -0.1 71,246 - RR42_RS21155 0.37 -0.1 71,246 - RR42_RS21155 0.37 +0.7 71,246 - RR42_RS21155 0.37 +1.1 71,246 - RR42_RS21155 0.37 +0.3 71,447 - RR42_RS21155 0.57 -0.2 71,633 - RR42_RS21155 0.76 -0.1 71,644 + RR42_RS21155 0.77 -1.7 71,644 + RR42_RS21155 0.77 -0.3 71,645 - RR42_RS21155 0.77 +0.2 71,749 + RR42_RS21155 0.88 -0.9 71,750 - RR42_RS21155 0.88 +1.5
Or see this region's nucleotide sequence