Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13995

Experiment: R2A with Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13980 and RR42_RS13985 are separated by 104 nucleotidesRR42_RS13985 and RR42_RS13990 are separated by 79 nucleotidesRR42_RS13990 and RR42_RS13995 are separated by 167 nucleotidesRR42_RS13995 and RR42_RS14000 are separated by 103 nucleotides RR42_RS13980: RR42_RS13980 - tRNA-Cys, at 3,012,643 to 3,012,716 _RS13980 RR42_RS13985: RR42_RS13985 - tRNA-Gly, at 3,012,821 to 3,012,896 _RS13985 RR42_RS13990: RR42_RS13990 - tRNA-Gly, at 3,012,976 to 3,013,051 _RS13990 RR42_RS13995: RR42_RS13995 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,013,219 to 3,013,821 _RS13995 RR42_RS14000: RR42_RS14000 - excinuclease ABC subunit C, at 3,013,925 to 3,015,985 _RS14000 Position (kb) 3013 3014Strain fitness (log2 ratio) -2 -1 0 1at 3012.249 kb on + strandat 3012.250 kb on - strandat 3012.250 kb on - strandat 3012.616 kb on - strandat 3012.641 kb on - strandat 3012.641 kb on - strandat 3012.641 kb on - strandat 3013.097 kb on - strandat 3013.203 kb on - strandat 3013.932 kb on - strandat 3013.932 kb on - strandat 3013.932 kb on - strandat 3013.942 kb on - strandat 3014.287 kb on + strand, within RR42_RS14000at 3014.499 kb on + strand, within RR42_RS14000at 3014.500 kb on - strand, within RR42_RS14000at 3014.500 kb on - strand, within RR42_RS14000at 3014.533 kb on - strand, within RR42_RS14000at 3014.533 kb on - strand, within RR42_RS14000at 3014.533 kb on - strand, within RR42_RS14000

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.5 mM
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3,012,249 + -0.8
3,012,250 - +0.4
3,012,250 - -0.3
3,012,616 - +0.4
3,012,641 - -0.3
3,012,641 - -1.6
3,012,641 - -0.1
3,013,097 - -2.6
3,013,203 - +0.0
3,013,932 - +0.5
3,013,932 - -0.0
3,013,932 - -0.1
3,013,942 - -0.8
3,014,287 + RR42_RS14000 0.18 -0.2
3,014,499 + RR42_RS14000 0.28 -1.0
3,014,500 - RR42_RS14000 0.28 +0.1
3,014,500 - RR42_RS14000 0.28 +0.5
3,014,533 - RR42_RS14000 0.30 -1.1
3,014,533 - RR42_RS14000 0.30 -1.2
3,014,533 - RR42_RS14000 0.30 +0.3

Or see this region's nucleotide sequence