Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08645

Experiment: R2A with Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08640 and RR42_RS08645 are separated by 48 nucleotidesRR42_RS08645 and RR42_RS08650 are separated by 184 nucleotides RR42_RS08640: RR42_RS08640 - phage capsid protein, at 1,810,007 to 1,811,014 _RS08640 RR42_RS08645: RR42_RS08645 - phage capsid scaffolding protein, at 1,811,063 to 1,811,881 _RS08645 RR42_RS08650: RR42_RS08650 - oxidoreductase, at 1,812,066 to 1,813,802 _RS08650 Position (kb) 1811 1812Strain fitness (log2 ratio) -3 -2 -1 0 1at 1810.065 kb on + strandat 1810.065 kb on + strandat 1810.066 kb on - strandat 1810.150 kb on - strand, within RR42_RS08640at 1810.153 kb on - strand, within RR42_RS08640at 1810.175 kb on - strand, within RR42_RS08640at 1810.203 kb on + strand, within RR42_RS08640at 1810.203 kb on + strand, within RR42_RS08640at 1810.309 kb on - strand, within RR42_RS08640at 1810.365 kb on + strand, within RR42_RS08640at 1810.366 kb on - strand, within RR42_RS08640at 1810.501 kb on + strand, within RR42_RS08640at 1810.502 kb on - strand, within RR42_RS08640at 1810.848 kb on + strand, within RR42_RS08640at 1810.848 kb on + strand, within RR42_RS08640at 1810.849 kb on - strand, within RR42_RS08640at 1810.933 kb on + strandat 1811.542 kb on - strand, within RR42_RS08645at 1811.590 kb on - strand, within RR42_RS08645at 1811.649 kb on + strand, within RR42_RS08645at 1811.782 kb on - strand, within RR42_RS08645at 1811.972 kb on + strandat 1811.973 kb on - strandat 1811.973 kb on - strandat 1812.044 kb on - strandat 1812.044 kb on - strandat 1812.096 kb on + strandat 1812.159 kb on + strandat 1812.558 kb on + strand, within RR42_RS08650at 1812.559 kb on - strand, within RR42_RS08650at 1812.559 kb on - strand, within RR42_RS08650at 1812.559 kb on - strand, within RR42_RS08650at 1812.654 kb on + strand, within RR42_RS08650at 1812.655 kb on - strand, within RR42_RS08650at 1812.655 kb on - strand, within RR42_RS08650at 1812.735 kb on + strand, within RR42_RS08650at 1812.771 kb on + strand, within RR42_RS08650at 1812.771 kb on + strand, within RR42_RS08650at 1812.786 kb on + strand, within RR42_RS08650at 1812.798 kb on + strand, within RR42_RS08650at 1812.799 kb on - strand, within RR42_RS08650at 1812.877 kb on - strand, within RR42_RS08650at 1812.877 kb on - strand, within RR42_RS08650at 1812.877 kb on - strand, within RR42_RS08650

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.5 mM
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1,810,065 + -0.2
1,810,065 + +1.2
1,810,066 - -1.4
1,810,150 - RR42_RS08640 0.14 -0.4
1,810,153 - RR42_RS08640 0.14 -0.5
1,810,175 - RR42_RS08640 0.17 -0.1
1,810,203 + RR42_RS08640 0.19 -2.1
1,810,203 + RR42_RS08640 0.19 +0.3
1,810,309 - RR42_RS08640 0.30 -0.6
1,810,365 + RR42_RS08640 0.36 -0.1
1,810,366 - RR42_RS08640 0.36 -0.1
1,810,501 + RR42_RS08640 0.49 -0.2
1,810,502 - RR42_RS08640 0.49 -1.6
1,810,848 + RR42_RS08640 0.83 -2.1
1,810,848 + RR42_RS08640 0.83 +1.5
1,810,849 - RR42_RS08640 0.84 +0.5
1,810,933 + +0.0
1,811,542 - RR42_RS08645 0.58 -1.5
1,811,590 - RR42_RS08645 0.64 -1.1
1,811,649 + RR42_RS08645 0.72 -0.2
1,811,782 - RR42_RS08645 0.88 -1.1
1,811,972 + -0.4
1,811,973 - -0.6
1,811,973 - -2.9
1,812,044 - -0.9
1,812,044 - -2.0
1,812,096 + -0.3
1,812,159 + +0.2
1,812,558 + RR42_RS08650 0.28 +0.5
1,812,559 - RR42_RS08650 0.28 -2.2
1,812,559 - RR42_RS08650 0.28 -1.4
1,812,559 - RR42_RS08650 0.28 -0.1
1,812,654 + RR42_RS08650 0.34 +0.1
1,812,655 - RR42_RS08650 0.34 +0.5
1,812,655 - RR42_RS08650 0.34 +0.2
1,812,735 + RR42_RS08650 0.39 +0.2
1,812,771 + RR42_RS08650 0.41 +0.5
1,812,771 + RR42_RS08650 0.41 +0.8
1,812,786 + RR42_RS08650 0.41 -0.1
1,812,798 + RR42_RS08650 0.42 -0.5
1,812,799 - RR42_RS08650 0.42 -0.5
1,812,877 - RR42_RS08650 0.47 +0.6
1,812,877 - RR42_RS08650 0.47 +1.4
1,812,877 - RR42_RS08650 0.47 -0.1

Or see this region's nucleotide sequence