Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07645

Experiment: R2A with Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07640 and RR42_RS07645 are separated by 103 nucleotidesRR42_RS07645 and RR42_RS07650 are separated by 49 nucleotidesRR42_RS07650 and RR42_RS07655 are separated by 155 nucleotides RR42_RS07640: RR42_RS07640 - ribosomal protein S12 methylthiotransferase, at 1,636,309 to 1,637,664 _RS07640 RR42_RS07645: RR42_RS07645 - acetyl-CoA acetyltransferase, at 1,637,768 to 1,638,952 _RS07645 RR42_RS07650: RR42_RS07650 - hypothetical protein, at 1,639,002 to 1,639,649 _RS07650 RR42_RS07655: RR42_RS07655 - cystathionine beta-lyase, at 1,639,805 to 1,640,983 _RS07655 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1636.902 kb on + strand, within RR42_RS07640at 1636.902 kb on + strand, within RR42_RS07640at 1636.902 kb on + strand, within RR42_RS07640at 1636.903 kb on - strand, within RR42_RS07640at 1636.903 kb on - strand, within RR42_RS07640at 1636.913 kb on - strand, within RR42_RS07640at 1637.015 kb on - strand, within RR42_RS07640at 1637.038 kb on + strand, within RR42_RS07640at 1637.039 kb on - strand, within RR42_RS07640at 1637.039 kb on - strand, within RR42_RS07640at 1637.044 kb on + strand, within RR42_RS07640at 1637.045 kb on - strand, within RR42_RS07640at 1637.560 kb on + strandat 1637.560 kb on + strandat 1637.560 kb on + strandat 1637.560 kb on + strandat 1637.560 kb on + strandat 1637.561 kb on - strandat 1637.561 kb on - strandat 1637.561 kb on - strandat 1637.690 kb on + strandat 1637.691 kb on - strandat 1637.732 kb on + strandat 1637.733 kb on - strandat 1637.733 kb on - strandat 1637.733 kb on - strandat 1637.733 kb on - strandat 1637.791 kb on - strandat 1638.272 kb on + strand, within RR42_RS07645at 1638.887 kb on + strandat 1638.997 kb on + strandat 1638.997 kb on + strandat 1638.998 kb on - strandat 1638.998 kb on - strandat 1639.153 kb on + strand, within RR42_RS07650at 1639.153 kb on + strand, within RR42_RS07650at 1639.154 kb on - strand, within RR42_RS07650at 1639.154 kb on - strand, within RR42_RS07650at 1639.257 kb on + strand, within RR42_RS07650at 1639.258 kb on - strand, within RR42_RS07650at 1639.258 kb on - strand, within RR42_RS07650at 1639.258 kb on - strand, within RR42_RS07650at 1639.275 kb on + strand, within RR42_RS07650at 1639.275 kb on + strand, within RR42_RS07650at 1639.275 kb on + strand, within RR42_RS07650at 1639.275 kb on + strand, within RR42_RS07650at 1639.356 kb on + strand, within RR42_RS07650at 1639.357 kb on - strand, within RR42_RS07650at 1639.357 kb on - strand, within RR42_RS07650at 1639.604 kb on + strandat 1639.605 kb on - strandat 1639.605 kb on - strandat 1639.609 kb on - strandat 1639.609 kb on - strandat 1639.609 kb on - strandat 1639.714 kb on - strandat 1639.870 kb on + strandat 1639.871 kb on - strandat 1639.871 kb on - strandat 1639.943 kb on + strand, within RR42_RS07655at 1639.944 kb on - strand, within RR42_RS07655at 1639.944 kb on - strand, within RR42_RS07655at 1639.944 kb on - strand, within RR42_RS07655at 1639.952 kb on + strand, within RR42_RS07655

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.5 mM
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1,636,902 + RR42_RS07640 0.44 -0.3
1,636,902 + RR42_RS07640 0.44 -1.3
1,636,902 + RR42_RS07640 0.44 -1.5
1,636,903 - RR42_RS07640 0.44 -0.0
1,636,903 - RR42_RS07640 0.44 -1.4
1,636,913 - RR42_RS07640 0.45 -0.2
1,637,015 - RR42_RS07640 0.52 -0.0
1,637,038 + RR42_RS07640 0.54 +0.2
1,637,039 - RR42_RS07640 0.54 +1.2
1,637,039 - RR42_RS07640 0.54 +0.6
1,637,044 + RR42_RS07640 0.54 -0.1
1,637,045 - RR42_RS07640 0.54 -0.7
1,637,560 + -0.8
1,637,560 + +0.1
1,637,560 + -0.4
1,637,560 + -0.9
1,637,560 + -0.3
1,637,561 - +2.3
1,637,561 - -0.3
1,637,561 - -0.8
1,637,690 + +0.0
1,637,691 - +0.6
1,637,732 + +0.5
1,637,733 - +0.1
1,637,733 - -0.4
1,637,733 - -0.1
1,637,733 - -0.5
1,637,791 - -0.4
1,638,272 + RR42_RS07645 0.43 -2.9
1,638,887 + -0.8
1,638,997 + +0.2
1,638,997 + -0.7
1,638,998 - -0.2
1,638,998 - -0.0
1,639,153 + RR42_RS07650 0.23 +1.4
1,639,153 + RR42_RS07650 0.23 +0.0
1,639,154 - RR42_RS07650 0.23 -0.1
1,639,154 - RR42_RS07650 0.23 -1.6
1,639,257 + RR42_RS07650 0.39 -1.6
1,639,258 - RR42_RS07650 0.40 -0.6
1,639,258 - RR42_RS07650 0.40 +0.2
1,639,258 - RR42_RS07650 0.40 -2.0
1,639,275 + RR42_RS07650 0.42 -0.6
1,639,275 + RR42_RS07650 0.42 +0.3
1,639,275 + RR42_RS07650 0.42 +0.3
1,639,275 + RR42_RS07650 0.42 -3.4
1,639,356 + RR42_RS07650 0.55 -1.1
1,639,357 - RR42_RS07650 0.55 -0.8
1,639,357 - RR42_RS07650 0.55 +0.2
1,639,604 + +1.0
1,639,605 - -0.1
1,639,605 - +0.8
1,639,609 - -0.4
1,639,609 - -0.4
1,639,609 - -1.1
1,639,714 - +2.7
1,639,870 + -0.6
1,639,871 - +0.6
1,639,871 - -0.8
1,639,943 + RR42_RS07655 0.12 +1.2
1,639,944 - RR42_RS07655 0.12 +1.0
1,639,944 - RR42_RS07655 0.12 -0.7
1,639,944 - RR42_RS07655 0.12 -3.1
1,639,952 + RR42_RS07655 0.12 +0.1

Or see this region's nucleotide sequence