Experiment: R2A with Nickel (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04355 and RR42_RS04360 are separated by 157 nucleotides RR42_RS04360 and RR42_RS04365 are separated by 78 nucleotides RR42_RS04365 and RR42_RS04370 are separated by 247 nucleotides
RR42_RS04355: RR42_RS04355 - recombination factor protein RarA, at 968,033 to 969,400
_RS04355
RR42_RS04360: RR42_RS04360 - seryl-tRNA synthetase, at 969,558 to 970,871
_RS04360
RR42_RS04365: RR42_RS04365 - tRNA-Ser, at 970,950 to 971,039
_RS04365
RR42_RS04370: RR42_RS04370 - hypothetical protein, at 971,287 to 972,186
_RS04370
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 968.765 kb on + strand, within RR42_RS04355 at 968.765 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.825 kb on + strand, within RR42_RS04355 at 968.826 kb on - strand, within RR42_RS04355 at 968.960 kb on + strand, within RR42_RS04355 at 969.014 kb on + strand, within RR42_RS04355 at 969.047 kb on + strand, within RR42_RS04355 at 969.057 kb on - strand, within RR42_RS04355 at 969.057 kb on - strand, within RR42_RS04355 at 969.194 kb on + strand, within RR42_RS04355 at 969.194 kb on + strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.195 kb on - strand, within RR42_RS04355 at 969.212 kb on + strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.213 kb on - strand, within RR42_RS04355 at 969.245 kb on + strand, within RR42_RS04355 at 969.246 kb on - strand, within RR42_RS04355 at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.398 kb on + strand at 969.399 kb on - strand at 969.399 kb on - strand at 969.501 kb on + strand at 969.501 kb on + strand at 969.502 kb on - strand at 969.502 kb on - strand at 971.284 kb on - strand at 971.284 kb on - strand at 971.380 kb on + strand, within RR42_RS04370 at 971.380 kb on + strand, within RR42_RS04370 at 971.407 kb on + strand, within RR42_RS04370 at 971.408 kb on - strand, within RR42_RS04370 at 971.422 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.647 kb on + strand, within RR42_RS04370 at 971.647 kb on + strand, within RR42_RS04370 at 971.668 kb on + strand, within RR42_RS04370 at 971.669 kb on - strand, within RR42_RS04370 at 971.773 kb on + strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.5 mM remove 968,765 + RR42_RS04355 0.54 -1.9 968,765 + RR42_RS04355 0.54 +0.3 968,825 + RR42_RS04355 0.58 -3.4 968,825 + RR42_RS04355 0.58 -1.6 968,826 - RR42_RS04355 0.58 -0.6 968,960 + RR42_RS04355 0.68 -2.1 969,014 + RR42_RS04355 0.72 -0.5 969,047 + RR42_RS04355 0.74 -0.2 969,057 - RR42_RS04355 0.75 +0.3 969,057 - RR42_RS04355 0.75 -1.1 969,194 + RR42_RS04355 0.85 -0.7 969,194 + RR42_RS04355 0.85 -0.2 969,195 - RR42_RS04355 0.85 -1.9 969,195 - RR42_RS04355 0.85 -1.2 969,195 - RR42_RS04355 0.85 -0.5 969,212 + RR42_RS04355 0.86 +0.4 969,213 - RR42_RS04355 0.86 -2.0 969,213 - RR42_RS04355 0.86 -1.7 969,213 - RR42_RS04355 0.86 -1.0 969,213 - RR42_RS04355 0.86 -1.1 969,213 - RR42_RS04355 0.86 -0.7 969,245 + RR42_RS04355 0.89 +0.1 969,246 - RR42_RS04355 0.89 -0.7 969,398 + -1.3 969,398 + -0.1 969,398 + +0.9 969,398 + -0.1 969,398 + +1.2 969,399 - -1.5 969,399 - -1.0 969,501 + -0.4 969,501 + -0.3 969,502 - +0.1 969,502 - +0.3 971,284 - +2.4 971,284 - -0.0 971,380 + RR42_RS04370 0.10 +0.0 971,380 + RR42_RS04370 0.10 +0.9 971,407 + RR42_RS04370 0.13 -0.1 971,408 - RR42_RS04370 0.13 +0.4 971,422 + RR42_RS04370 0.15 -1.1 971,476 + RR42_RS04370 0.21 +0.6 971,476 + -0.3 971,476 + RR42_RS04370 0.21 -0.6 971,476 + RR42_RS04370 0.21 +0.2 971,476 + RR42_RS04370 0.21 +0.6 971,476 + RR42_RS04370 0.21 -0.1 971,477 - RR42_RS04370 0.21 +1.5 971,477 - RR42_RS04370 0.21 +0.6 971,477 - RR42_RS04370 0.21 -1.7 971,477 - RR42_RS04370 0.21 +0.7 971,647 + RR42_RS04370 0.40 -1.2 971,647 + RR42_RS04370 0.40 -0.3 971,668 + RR42_RS04370 0.42 +0.7 971,669 - RR42_RS04370 0.42 -0.6 971,773 + RR42_RS04370 0.54 -3.5 971,774 - RR42_RS04370 0.54 +1.0 971,774 - RR42_RS04370 0.54 +0.1 971,774 - RR42_RS04370 0.54 -0.8
Or see this region's nucleotide sequence