Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4982

Experiment: apoplastic; Green bean; 6 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 6 days
5,906,574	+		Psyr_4981	0.14	+0.5
5,906,574	+		Psyr_4981	0.14	-0.2
5,906,574	+		Psyr_4981	0.14	-0.2
5,906,574	+		Psyr_4981	0.14	-1.5
5,906,574	+		Psyr_4981	0.14	-0.6
5,906,574	+		Psyr_4981	0.14	-0.2
5,906,574	+		Psyr_4981	0.14	+0.7
5,906,574	+		Psyr_4981	0.14	-0.0
5,906,574	+		Psyr_4981	0.14	+0.3
5,906,574	+		Psyr_4981	0.14	-0.5
5,906,574	+		Psyr_4981	0.14	-0.7
5,906,574	+		Psyr_4981	0.14	+1.7
5,906,574	+		Psyr_4981	0.14	-0.5
5,906,574	+		Psyr_4981	0.14	-0.2
5,906,574	+		Psyr_4981	0.14	-1.0
5,906,574	+		Psyr_4981	0.14	-3.4
5,906,574	+		Psyr_4981	0.14	+0.1
5,906,575	-		Psyr_4981	0.14	+2.1
5,906,575	-		Psyr_4981	0.14	+1.6
5,906,575	-		Psyr_4981	0.14	+0.8
5,906,575	-		Psyr_4981	0.14	+0.8
5,906,575	-		Psyr_4981	0.14	-0.0
5,906,575	-		Psyr_4981	0.14	+0.1
5,906,575	-		Psyr_4981	0.14	-0.5
5,906,575	-		Psyr_4981	0.14	+1.3
5,906,575	-		Psyr_4981	0.14	+0.7
5,906,605	-		Psyr_4981	0.17	+1.7
5,906,605	-		Psyr_4981	0.17	+0.3
5,906,605	-		Psyr_4981	0.17	+1.3
5,906,605	-		Psyr_4981	0.17	+0.4
5,906,605	-		Psyr_4981	0.17	+0.5
5,906,605	-		Psyr_4981	0.17	+2.1
5,906,619	+		Psyr_4981	0.18	-0.2
5,906,620	-		Psyr_4981	0.18	-0.1
5,906,634	+		Psyr_4981	0.19	+0.7
5,906,634	+		Psyr_4981	0.19	+1.5
5,906,634	+		Psyr_4981	0.19	+0.8
5,906,635	-		Psyr_4981	0.20	+0.5
5,906,635	-		Psyr_4981	0.20	-0.0
5,906,704	+		Psyr_4981	0.26	-1.3
5,906,704	+		Psyr_4981	0.26	-0.8
5,906,733	+		Psyr_4981	0.29	+0.2
5,906,733	+		Psyr_4981	0.29	-0.8
5,906,734	-		Psyr_4981	0.29	+0.9
5,906,761	+		Psyr_4981	0.31	-0.2
5,906,761	+		Psyr_4981	0.31	-1.3
5,906,798	-		Psyr_4981	0.35	-0.5
5,906,840	+		Psyr_4981	0.39	-1.1
5,906,841	-		Psyr_4981	0.39	-3.5
5,906,841	-		Psyr_4981	0.39	-0.7
5,906,890	+		Psyr_4981	0.43	-1.7
5,906,891	-		Psyr_4981	0.43	-0.2
5,906,891	-		Psyr_4981	0.43	-0.7
5,906,934	-		Psyr_4981	0.47	+0.8
5,906,948	+		Psyr_4981	0.49	+0.8
5,906,949	-		Psyr_4981	0.49	+0.7
5,907,040	+		Psyr_4981	0.57	-2.4
5,907,040	+		Psyr_4981	0.57	-0.5
5,907,041	-		Psyr_4981	0.57	+0.3
5,907,066	+		Psyr_4981	0.59	+1.1
5,907,066	+		Psyr_4981	0.59	+1.3
5,907,073	+		Psyr_4981	0.60	-1.9
5,907,073	+		Psyr_4981	0.60	-0.5
5,907,074	-		Psyr_4981	0.60	-0.3
5,907,106	+		Psyr_4981	0.63	-1.5
5,907,107	-		Psyr_4981	0.63	+0.7
5,907,107	-		Psyr_4981	0.63	+1.7
5,907,107	-		Psyr_4981	0.63	-2.1
5,907,107	-		Psyr_4981	0.63	+0.7
5,907,194	+		Psyr_4981	0.71	+0.5
5,907,243	+		Psyr_4981	0.76	-1.2
5,907,273	+		Psyr_4981	0.79	-0.5
5,907,274	-		Psyr_4981	0.79	-1.1
5,907,274	-		Psyr_4981	0.79	-0.8
5,907,276	-		Psyr_4981	0.79	-1.4
5,907,291	-		Psyr_4981	0.80	+0.3
5,907,388	+		Psyr_4981	0.89	-0.7
5,907,388	+		Psyr_4981	0.89	+0.2
5,907,388	+		Psyr_4981	0.89	+1.3
5,907,389	-		Psyr_4981	0.89	+1.5
5,907,389	-		Psyr_4981	0.89	-0.3
5,907,562	-				+1.3
5,907,565	-				-0.5
5,907,654	-		Psyr_4982	0.21	-3.2
5,907,654	-		Psyr_4982	0.21	+0.3
5,907,658	-		Psyr_4982	0.22	+1.3
5,907,671	-		Psyr_4982	0.23	-0.8
5,907,676	-		Psyr_4982	0.24	-1.3
5,907,676	-		Psyr_4982	0.24	-0.4
5,907,815	-		Psyr_4982	0.43	-2.5
5,907,815	-		Psyr_4982	0.43	+0.6
5,907,815	-		Psyr_4982	0.43	+0.5
5,907,828	-		Psyr_4982	0.45	-0.0
5,907,828	-		Psyr_4982	0.45	-0.8
5,907,873	-		Psyr_4982	0.51	-0.4
5,907,930	-		Psyr_4982	0.59	-1.3
5,907,930	-		Psyr_4982	0.59	-2.2
5,907,943	-		Psyr_4982	0.61	-0.0
5,907,946	-		Psyr_4982	0.61	+0.6
5,908,051	-		Psyr_4982	0.76	+0.9
5,908,054	-		Psyr_4982	0.76	+1.0
5,908,054	-		Psyr_4982	0.76	-2.7
5,908,072	-		Psyr_4982	0.78	-0.0
5,908,126	+		Psyr_4982	0.86	-0.3
5,908,127	-		Psyr_4982	0.86	-0.5
5,908,127	-		Psyr_4982	0.86	-1.4
5,908,127	-		Psyr_4982	0.86	-1.3
5,908,127	-		Psyr_4982	0.86	-0.9
5,908,127	-		Psyr_4982	0.86	-1.7
5,908,127	-		Psyr_4982	0.86	+1.7
5,908,127	-		Psyr_4982	0.86	-0.6
5,908,127	-		Psyr_4982	0.86	+1.4
5,908,240	-				+1.4
5,908,240	-				-0.1
5,908,240	-				+1.7
5,908,240	-				-2.0
5,908,243	+				+0.5
5,908,243	+				+0.5
5,908,243	+				-1.9
5,908,244	-				-3.1
5,908,267	+				+0.1
5,908,308	+				-0.8
5,908,308	+				-2.4
5,908,308	+				-1.5
5,908,309	-				+1.2
5,908,309	-				+0.8
5,908,465	-				-1.3
5,908,471	+				+1.1
5,908,471	+				+0.7
5,908,472	-				-0.4
5,908,472	-				+0.7
5,908,472	-				+2.2
5,908,472	-				-0.5
5,908,483	-				+1.0
5,908,483	-				+0.3
5,908,483	-				-0.7
5,908,532	+		Psyr_4983	0.13	+0.7
5,908,548	+		Psyr_4983	0.13	-0.5
5,908,548	+		Psyr_4983	0.13	-2.4
5,908,548	+		Psyr_4983	0.13	+0.3
5,908,548	+		Psyr_4983	0.13	+1.5
5,908,548	+		Psyr_4983	0.13	-1.2
5,908,548	+		Psyr_4983	0.13	+1.0
5,908,548	+		Psyr_4983	0.13	-0.5
5,908,548	+		Psyr_4983	0.13	+2.3
5,908,549	-		Psyr_4983	0.13	+1.3
5,908,549	-		Psyr_4983	0.13	+0.9
5,908,549	-		Psyr_4983	0.13	-0.6
5,908,549	-		Psyr_4983	0.13	+0.8
5,908,549	-		Psyr_4983	0.13	+1.1
5,908,549	-		Psyr_4983	0.13	-0.5
5,908,549	-		Psyr_4983	0.13	+0.8
5,908,592	+		Psyr_4983	0.16	-1.2
5,908,601	+		Psyr_4983	0.16	+1.4
5,908,601	+		Psyr_4983	0.16	-1.3
5,908,601	+		Psyr_4983	0.16	+0.8
5,908,601	+		Psyr_4983	0.16	+1.5
5,908,601	+		Psyr_4983	0.16	+0.3
5,908,601	+		Psyr_4983	0.16	-0.8
5,908,601	+		Psyr_4983	0.16	-0.6
5,908,602	-		Psyr_4983	0.16	+0.6
5,908,602	-		Psyr_4983	0.16	-1.3
5,908,602	-		Psyr_4983	0.16	-0.1
5,908,602	-		Psyr_4983	0.16	+0.4
5,908,602	-		Psyr_4983	0.16	+0.4
5,908,602	-		Psyr_4983	0.16	-2.0
5,908,605	+		Psyr_4983	0.16	-0.4
5,908,605	+		Psyr_4983	0.16	-1.3
5,908,605	+		Psyr_4983	0.16	+0.9
5,908,605	+		Psyr_4983	0.16	+0.1
5,908,605	+		Psyr_4983	0.16	-0.0
5,908,605	-		Psyr_4983	0.16	+0.8
5,908,606	-		Psyr_4983	0.17	+0.3
5,908,606	-		Psyr_4983	0.17	+0.4
5,908,606	-		Psyr_4983	0.17	+0.7
5,908,606	-		Psyr_4983	0.17	-1.5
5,908,606	-		Psyr_4983	0.17	-0.6
5,908,606	-		Psyr_4983	0.17	+1.8
5,908,606	-		Psyr_4983	0.17	-2.1
5,908,606	-		Psyr_4983	0.17	+2.3
5,908,606	-		Psyr_4983	0.17	-0.6
5,908,606	-		Psyr_4983	0.17	-0.6
5,908,606	-		Psyr_4983	0.17	-0.5
5,908,606	-		Psyr_4983	0.17	+1.6
5,908,606	-		Psyr_4983	0.17	+0.1
5,908,606	-		Psyr_4983	0.17	-0.5
5,908,606	-		Psyr_4983	0.17	-0.8
5,908,606	-		Psyr_4983	0.17	+0.4
5,908,637	+		Psyr_4983	0.18	-0.5
5,908,637	+		Psyr_4983	0.18	-0.3
5,908,637	+		Psyr_4983	0.18	+0.5
5,908,638	-		Psyr_4983	0.18	+1.4
5,908,638	-		Psyr_4983	0.18	+1.3
5,908,652	+		Psyr_4983	0.19	+3.0
5,908,652	+		Psyr_4983	0.19	+0.8
5,908,652	+		Psyr_4983	0.19	+0.7
5,908,652	+		Psyr_4983	0.19	+0.1
5,908,653	-		Psyr_4983	0.19	+0.3
5,908,653	-		Psyr_4983	0.19	-1.5
5,908,653	-		Psyr_4983	0.19	-0.5
5,908,690	-		Psyr_4983	0.21	+1.1
5,908,690	-		Psyr_4983	0.21	-0.7
5,908,718	+		Psyr_4983	0.23	+0.7
5,908,757	+		Psyr_4983	0.25	-0.4
5,908,757	+		Psyr_4983	0.25	+1.2
5,908,757	+		Psyr_4983	0.25	+0.4
5,908,757	+		Psyr_4983	0.25	-1.0
5,908,757	+		Psyr_4983	0.25	+0.2
5,908,757	+		Psyr_4983	0.25	+0.7
5,908,757	+		Psyr_4983	0.25	-0.5
5,908,757	+		Psyr_4983	0.25	+0.8
5,908,757	+		Psyr_4983	0.25	+0.5
5,908,757	+		Psyr_4983	0.25	-0.4
5,908,757	+		Psyr_4983	0.25	+0.3
5,908,757	+		Psyr_4983	0.25	+0.8
5,908,757	+		Psyr_4983	0.25	-0.4
5,908,757	+		Psyr_4983	0.25	-0.7
5,908,757	+		Psyr_4983	0.25	-0.1
5,908,757	+		Psyr_4983	0.25	-1.9
5,908,757	+		Psyr_4983	0.25	+0.9
5,908,757	+		Psyr_4983	0.25	-0.6
5,908,757	+		Psyr_4983	0.25	-1.6
5,908,757	+		Psyr_4983	0.25	-1.6
5,908,757	+		Psyr_4983	0.25	+0.4
5,908,757	+		Psyr_4983	0.25	+2.1
5,908,757	+		Psyr_4983	0.25	+1.7
5,908,757	+				+1.3
5,908,757	+		Psyr_4983	0.25	-1.0
5,908,758	-		Psyr_4983	0.25	+1.4
5,908,758	-		Psyr_4983	0.25	+0.5
5,908,758	-		Psyr_4983	0.25	+0.3
5,908,758	-		Psyr_4983	0.25	+1.1
5,908,758	-		Psyr_4983	0.25	+1.3
5,908,758	-		Psyr_4983	0.25	-0.9
5,908,758	-		Psyr_4983	0.25	-0.7
5,908,758	-		Psyr_4983	0.25	+0.7
5,908,758	-		Psyr_4983	0.25	-0.2
5,908,758	-		Psyr_4983	0.25	-2.2
5,908,758	-		Psyr_4983	0.25	-1.2
5,908,758	-		Psyr_4983	0.25	-1.0
5,908,758	-		Psyr_4983	0.25	+0.7
5,908,758	-		Psyr_4983	0.25	-0.5
5,908,758	-		Psyr_4983	0.25	-0.9
5,908,758	-		Psyr_4983	0.25	-2.3
5,908,758	-		Psyr_4983	0.25	+0.2
5,908,758	-		Psyr_4983	0.25	-1.9
5,908,758	-		Psyr_4983	0.25	+0.5
5,908,758	-		Psyr_4983	0.25	-0.2
5,908,758	-		Psyr_4983	0.25	+1.0
5,908,758	-		Psyr_4983	0.25	-0.3
5,908,758	-		Psyr_4983	0.25	-1.4
5,908,758	-		Psyr_4983	0.25	-1.3
5,908,758	-		Psyr_4983	0.25	+0.8
5,908,830	-		Psyr_4983	0.29	+0.8
5,908,830	-		Psyr_4983	0.29	-0.8
5,908,830	-		Psyr_4983	0.29	-0.0
5,908,830	-		Psyr_4983	0.29	-2.6
5,908,840	+		Psyr_4983	0.29	+0.2
5,908,840	+		Psyr_4983	0.29	+0.1
5,908,855	+		Psyr_4983	0.30	+2.0
5,908,855	+		Psyr_4983	0.30	+0.3
5,908,856	-		Psyr_4983	0.30	-0.4
5,908,884	+		Psyr_4983	0.32	-1.2
5,908,884	+		Psyr_4983	0.32	-1.3
5,908,885	-		Psyr_4983	0.32	+1.3
5,908,885	-		Psyr_4983	0.32	-2.0
5,908,885	-		Psyr_4983	0.32	-0.5
5,908,885	-		Psyr_4983	0.32	+0.3
5,908,924	+		Psyr_4983	0.34	-0.7
5,908,925	-		Psyr_4983	0.34	+0.4
5,908,925	-		Psyr_4983	0.34	+0.1
5,909,019	-		Psyr_4983	0.39	-1.9
5,909,039	-		Psyr_4983	0.40	+1.3
5,909,039	-		Psyr_4983	0.40	-1.3
5,909,039	-		Psyr_4983	0.40	-0.5
5,909,063	-		Psyr_4983	0.41	-2.4
5,909,102	+		Psyr_4983	0.43	-2.4
5,909,102	+		Psyr_4983	0.43	-0.8
5,909,102	+		Psyr_4983	0.43	+0.3
5,909,102	+		Psyr_4983	0.43	-1.9
5,909,102	+		Psyr_4983	0.43	-0.9
5,909,103	-		Psyr_4983	0.43	-0.8
5,909,103	-		Psyr_4983	0.43	+1.0
5,909,103	-		Psyr_4983	0.43	-0.7
5,909,103	-		Psyr_4983	0.43	+1.1
5,909,103	-		Psyr_4983	0.43	-2.0
5,909,114	+		Psyr_4983	0.44	+0.8
5,909,114	+		Psyr_4983	0.44	-1.6
5,909,115	-		Psyr_4983	0.44	-1.3
5,909,115	-		Psyr_4983	0.44	-0.4
5,909,161	+		Psyr_4983	0.47	+0.4
5,909,179	-		Psyr_4983	0.48	+1.7
5,909,185	+		Psyr_4983	0.48	+0.9
5,909,185	+		Psyr_4983	0.48	+0.9
5,909,186	-		Psyr_4983	0.48	-1.5
5,909,206	+		Psyr_4983	0.49	+1.0
5,909,207	-		Psyr_4983	0.49	-1.2
5,909,207	-		Psyr_4983	0.49	+1.0
5,909,207	-		Psyr_4983	0.49	+0.5