Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4892

Experiment: apoplastic; Green bean; 6 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Green bean; 6 days
5,803,263	-				+1.1
5,803,368	-		Psyr_4891	0.15	-2.2
5,803,542	+		Psyr_4891	0.38	+0.6
5,803,542	+		Psyr_4891	0.38	-0.3
5,803,571	+		Psyr_4891	0.42	-0.2
5,803,571	+		Psyr_4891	0.42	+0.3
5,803,571	+		Psyr_4891	0.42	+0.1
5,803,572	-		Psyr_4891	0.42	-0.6
5,803,572	-		Psyr_4891	0.42	+1.2
5,803,572	-		Psyr_4891	0.42	-2.1
5,803,572	-		Psyr_4891	0.42	+1.6
5,803,572	-		Psyr_4891	0.42	-1.0
5,803,655	+		Psyr_4891	0.53	+0.8
5,803,655	+		Psyr_4891	0.53	+1.1
5,803,656	-		Psyr_4891	0.53	+0.8
5,803,663	+		Psyr_4891	0.54	-1.1
5,803,754	+		Psyr_4891	0.66	-0.9
5,803,791	-		Psyr_4891	0.71	-1.9
5,803,928	+		Psyr_4891	0.89	+2.1
5,803,928	+		Psyr_4891	0.89	-0.9
5,803,929	-		Psyr_4891	0.89	-2.3
5,803,996	+				+0.5
5,804,070	-				+1.0
5,804,109	+				-2.7
5,804,151	+				-1.2
5,804,152	-				-2.5
5,804,155	+				+0.3
5,804,155	+				-1.1
5,804,155	+				+1.4
5,804,155	+				+2.2
5,804,155	+				-0.1
5,804,155	+				-0.2
5,804,155	+				+0.9
5,804,155	+				-0.6
5,804,155	+				-2.6
5,804,155	+				-0.4
5,804,155	+				+0.4
5,804,155	+				+0.8
5,804,156	-				-0.3
5,804,156	-				-2.3
5,804,156	-				-0.0
5,804,156	-				+0.0
5,804,156	-				+0.5
5,804,156	-				+0.2
5,804,156	-				-0.9
5,804,156	-				+0.3
5,804,156	-				-1.5
5,804,159	+				+0.2
5,804,159	+				-1.5
5,804,159	+				-0.8
5,804,160	-				+0.7
5,804,160	-				-2.1
5,804,160	-				-1.5
5,804,160	-				-0.6
5,804,212	+				+1.4
5,804,212	+				+0.1
5,804,213	-				-0.3
5,804,213	-				+0.3
5,804,213	-				-2.4
5,804,213	-				+1.7
5,804,213	-				+1.6
5,804,213	-				+0.3
5,804,213	-				-0.8
5,804,213	-				-0.1
5,804,259	-				-1.5
5,804,259	-				-0.1
5,804,471	+		Psyr_4892	0.16	+0.4
5,804,472	-		Psyr_4892	0.16	+1.4
5,804,472	-		Psyr_4892	0.16	-2.7
5,804,479	+		Psyr_4892	0.16	+0.2
5,804,479	+		Psyr_4892	0.16	+0.6
5,804,479	+		Psyr_4892	0.16	-1.2
5,804,479	+		Psyr_4892	0.16	-1.0
5,804,480	-		Psyr_4892	0.16	-0.6
5,804,480	-		Psyr_4892	0.16	+1.4
5,804,480	-		Psyr_4892	0.16	-1.4
5,804,483	+		Psyr_4892	0.17	+1.1
5,804,483	+		Psyr_4892	0.17	-1.0
5,804,483	+		Psyr_4892	0.17	+0.7
5,804,483	+		Psyr_4892	0.17	+0.3
5,804,484	-		Psyr_4892	0.17	-1.5
5,804,506	+		Psyr_4892	0.18	-3.0
5,804,506	+		Psyr_4892	0.18	+1.3
5,804,506	+		Psyr_4892	0.18	+0.3
5,804,506	+		Psyr_4892	0.18	+0.5
5,804,506	+		Psyr_4892	0.18	-1.9
5,804,506	+		Psyr_4892	0.18	-1.5
5,804,506	+		Psyr_4892	0.18	+1.1
5,804,506	+		Psyr_4892	0.18	-0.7
5,804,506	+		Psyr_4892	0.18	+2.3
5,804,507	-		Psyr_4892	0.18	+0.4
5,804,507	-		Psyr_4892	0.18	+0.1
5,804,507	-		Psyr_4892	0.18	+0.3
5,804,543	+		Psyr_4892	0.21	-2.5
5,804,543	+		Psyr_4892	0.21	-2.6
5,804,543	+		Psyr_4892	0.21	-0.7
5,804,544	-		Psyr_4892	0.21	+0.7
5,804,544	-		Psyr_4892	0.21	-0.4
5,804,544	-		Psyr_4892	0.21	+0.1
5,804,566	+		Psyr_4892	0.22	+0.4
5,804,599	+		Psyr_4892	0.24	+1.8
5,804,599	+		Psyr_4892	0.24	+2.2
5,804,599	+		Psyr_4892	0.24	+1.4
5,804,599	+		Psyr_4892	0.24	-0.9
5,804,600	-		Psyr_4892	0.24	-1.5
5,804,600	-		Psyr_4892	0.24	+1.3
5,804,600	-		Psyr_4892	0.24	-3.1
5,804,600	-		Psyr_4892	0.24	+1.4
5,804,600	-		Psyr_4892	0.24	+0.3
5,804,600	-		Psyr_4892	0.24	+0.8
5,804,600	-		Psyr_4892	0.24	+1.6
5,804,600	-		Psyr_4892	0.24	-1.3
5,804,698	-		Psyr_4892	0.31	+0.4
5,804,698	-		Psyr_4892	0.31	+0.7
5,804,781	+		Psyr_4892	0.36	-0.0
5,804,782	-		Psyr_4892	0.36	+0.3
5,804,782	-		Psyr_4892	0.36	-1.3
5,804,782	-		Psyr_4892	0.36	-1.5
5,804,782	-		Psyr_4892	0.36	+0.9
5,804,782	-		Psyr_4892	0.36	-0.5
5,804,782	-		Psyr_4892	0.36	-0.9
5,804,820	-		Psyr_4892	0.39	-0.3
5,804,909	+		Psyr_4892	0.44	-1.4
5,804,910	-		Psyr_4892	0.44	+2.3
5,804,917	+		Psyr_4892	0.45	+0.2
5,804,919	+		Psyr_4892	0.45	+0.4
5,804,920	-		Psyr_4892	0.45	+1.5
5,804,920	-		Psyr_4892	0.45	+0.1
5,804,920	-		Psyr_4892	0.45	-0.8
5,804,920	-		Psyr_4892	0.45	-1.1
5,804,920	-		Psyr_4892	0.45	-0.3
5,805,043	+		Psyr_4892	0.53	-1.5
5,805,043	+		Psyr_4892	0.53	-0.7
5,805,043	+		Psyr_4892	0.53	+1.3
5,805,043	+		Psyr_4892	0.53	+0.4
5,805,043	+		Psyr_4892	0.53	+1.3
5,805,043	+		Psyr_4892	0.53	+0.0
5,805,043	+		Psyr_4892	0.53	+0.8
5,805,044	-		Psyr_4892	0.53	+0.2
5,805,044	-		Psyr_4892	0.53	-1.4
5,805,044	-		Psyr_4892	0.53	-0.9
5,805,044	-		Psyr_4892	0.53	-1.1
5,805,044	-		Psyr_4892	0.53	-2.8
5,805,044	-		Psyr_4892	0.53	+0.6
5,805,044	-		Psyr_4892	0.53	+0.7
5,805,044	-		Psyr_4892	0.53	+1.3
5,805,044	-		Psyr_4892	0.53	-0.5
5,805,044	-		Psyr_4892	0.53	-0.4
5,805,120	-		Psyr_4892	0.58	+0.2
5,805,120	-		Psyr_4892	0.58	-0.9
5,805,169	+		Psyr_4892	0.61	+0.8
5,805,169	+		Psyr_4892	0.61	+1.6
5,805,169	+		Psyr_4892	0.61	-0.1
5,805,169	+		Psyr_4892	0.61	+1.5
5,805,169	+		Psyr_4892	0.61	-1.1
5,805,169	+		Psyr_4892	0.61	+1.5
5,805,169	+		Psyr_4892	0.61	-3.6
5,805,169	+		Psyr_4892	0.61	+1.1
5,805,169	+		Psyr_4892	0.61	+0.2
5,805,170	-		Psyr_4892	0.61	+0.4
5,805,170	-		Psyr_4892	0.61	-1.2
5,805,170	-		Psyr_4892	0.61	+0.6
5,805,170	-		Psyr_4892	0.61	-1.7
5,805,170	-		Psyr_4892	0.61	-2.2
5,805,170	-		Psyr_4892	0.61	-1.1
5,805,170	-		Psyr_4892	0.61	+1.1
5,805,170	-		Psyr_4892	0.61	+0.0
5,805,170	-		Psyr_4892	0.61	-2.4
5,805,170	-		Psyr_4892	0.61	+1.4
5,805,240	+		Psyr_4892	0.66	-1.7
5,805,241	-		Psyr_4892	0.66	+1.3
5,805,241	-		Psyr_4892	0.66	+1.1
5,805,241	-		Psyr_4892	0.66	-1.7
5,805,241	-		Psyr_4892	0.66	+1.7
5,805,271	-		Psyr_4892	0.68	-0.1
5,805,303	+		Psyr_4892	0.70	-1.3
5,805,303	+		Psyr_4892	0.70	+0.6
5,805,303	+		Psyr_4892	0.70	-1.5
5,805,303	+		Psyr_4892	0.70	+0.9
5,805,303	+		Psyr_4892	0.70	+1.5
5,805,303	+		Psyr_4892	0.70	-0.8
5,805,304	-		Psyr_4892	0.70	-1.7
5,805,304	-		Psyr_4892	0.70	+0.8
5,805,304	-		Psyr_4892	0.70	-1.3
5,805,333	+		Psyr_4892	0.72	+1.2
5,805,333	+		Psyr_4892	0.72	+1.9
5,805,333	+		Psyr_4892	0.72	+1.3
5,805,334	-		Psyr_4892	0.72	+0.8
5,805,367	+		Psyr_4892	0.74	-0.2
5,805,397	-		Psyr_4892	0.76	+1.4
5,805,397	-		Psyr_4892	0.76	+1.9
5,805,485	+		Psyr_4892	0.82	+0.1
5,805,485	+		Psyr_4892	0.82	-0.9
5,805,485	+		Psyr_4892	0.82	+1.6
5,805,485	+		Psyr_4892	0.82	-0.3
5,805,485	+		Psyr_4892	0.82	+0.8
5,805,485	+		Psyr_4892	0.82	-0.3
5,805,485	+		Psyr_4892	0.82	+0.7
5,805,486	-		Psyr_4892	0.82	-1.0
5,805,486	-		Psyr_4892	0.82	-1.1
5,805,486	-		Psyr_4892	0.82	+3.6
5,805,486	-		Psyr_4892	0.82	-0.1
5,805,486	-		Psyr_4892	0.82	-1.0
5,805,486	-		Psyr_4892	0.82	-0.7
5,805,486	-		Psyr_4892	0.82	+2.0
5,805,486	-		Psyr_4892	0.82	+0.7
5,805,522	-		Psyr_4892	0.84	+0.7
5,805,522	-		Psyr_4892	0.84	-1.9
5,805,611	-				+0.1
5,805,623	-				-0.2
5,805,623	-				+0.7
5,805,623	-				-1.5
5,805,625	+				-0.1
5,805,625	+				+0.7
5,805,625	+				-0.9
5,805,625	+				-0.9
5,805,625	+				+1.5
5,805,626	-				+0.4
5,805,626	-				+0.6
5,805,626	-				-0.8
5,805,723	-				+1.2
5,805,765	+				-1.3
5,805,850	+				-1.7
5,805,850	+				-3.3
5,805,850	+				-1.7
5,805,850	+				-2.9
5,805,850	+				-1.2
5,805,850	+				-1.5
5,805,850	+				-1.7
5,805,851	-				-0.6
5,805,851	-				-2.3
5,805,851	-				-3.4
5,805,851	-				-2.3
5,805,874	+				-1.7
5,805,875	-				-1.7
5,805,893	+				-2.2
5,806,394	+		Psyr_4893	0.75	-2.7
5,806,394	+		Psyr_4893	0.75	-2.1
5,806,667	+				-3.4
5,806,667	+				-1.1
5,806,667	+				-1.3
5,806,668	-				+1.3